Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 0.0e+00 1928.3 984 100.0
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 0.0e+00 1170.2 991 63.8
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1142.5 990 63.0
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1139.4 990 62.7
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 0.0e+00 1134.8 1046 60.4
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1086.6 951 62.4
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 6.2e-300 1034.2 983 58.9
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 3.8e-297 1025.0 995 58.1
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 2.3e-294 1015.8 971 58.6
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 3.9e-294 1015.0 974 58.8
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.4e-290 1001.9 985 58.0
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 6.5e-289 997.7 997 57.9
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.2e-287 993.4 1003 57.2
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 1.0e-286 990.3 972 57.7
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 9.7e-285 983.8 909 59.0
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 8.2e-284 980.7 957 56.8
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 4.2e-280 968.4 988 55.8
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 1.2e-279 966.8 998 54.3
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 1.7e-276 956.4 969 56.3
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 1.1e-275 953.7 971 55.5
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 2.4e-275 952.6 969 55.0
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 6.9e-275 951.0 994 54.2
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 7.7e-274 947.6 867 58.7
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 3.8e-273 945.3 962 55.4
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.8e-270 936.4 961 54.9
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.8e-270 936.4 1000 55.1
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 3.0e-270 935.6 1002 54.5
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 1.5e-269 933.3 989 55.1
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 4.4e-269 931.8 1004 53.7
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.4e-267 926.8 997 53.0
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 2.5e-264 916.0 964 55.4
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 3.2e-264 915.6 963 54.5
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 4.2e-264 915.2 992 53.2
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 7.2e-264 914.4 984 54.7
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 2.7e-263 912.5 958 54.9
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.8e-262 909.8 1016 52.0
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 4.0e-262 908.7 994 53.2
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 1.4e-259 900.2 982 52.4
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.8e-259 899.8 1001 51.9
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 5.3e-259 898.3 1001 51.6
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 7.0e-259 897.9 975 53.0
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 3.8e-257 892.1 1011 51.5
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.5e-256 890.2 1043 50.7
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 2.7e-255 885.9 989 53.1
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 3.0e-254 882.5 993 52.0
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 3.7e-252 875.5 968 52.4
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 6.3e-252 874.8 991 51.5
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.4e-251 873.6 993 51.3
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 2.4e-251 872.8 965 51.4
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 2.0e-250 869.8 996 50.9
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 5.9e-250 868.2 949 52.6
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 1.3e-249 867.1 993 51.4
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 2.9e-249 865.9 986 51.6
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 2.1e-247 859.8 952 51.1
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 4.7e-247 858.6 1000 51.2
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 1.0e-246 857.4 984 50.7
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.6e-245 852.8 957 51.7
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 2.4e-243 846.3 1003 50.3
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 1.7e-241 840.1 882 52.4
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 2.3e-241 839.7 971 50.2
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 3.8e-241 839.0 1003 51.1
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 8.6e-241 837.8 925 52.0
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 6.1e-239 831.6 977 49.6
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 4.9e-236 822.0 965 49.3
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 8.3e-236 821.2 872 54.7
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 8.3e-236 821.2 1003 50.0
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 3.5e-234 815.8 872 53.2
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 8.6e-233 811.2 739 59.3
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 4.7e-231 805.4 720 59.7
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 1.0e-230 804.3 985 49.0
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 2.6e-229 799.7 983 48.6
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.0e-225 787.7 961 47.6
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 2.3e-225 786.6 891 51.3
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 3.9e-225 785.8 1007 47.4
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.6e-223 780.4 888 49.7
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 6.2e-223 778.5 977 47.9
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 1.1e-222 777.7 961 47.5
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.2e-221 774.2 868 50.3
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 2.6e-221 773.1 959 47.0
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 2.6e-221 773.1 914 50.0
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 9.2e-219 764.6 967 46.4
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 4.6e-218 762.3 995 45.6
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.4e-214 750.7 990 45.3
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 2.3e-209 733.4 924 47.1
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 2.3e-209 733.4 968 45.2
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 8.6e-209 731.5 968 45.2
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.4e-206 724.2 1008 43.5
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 3.4e-205 719.5 877 47.3
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 6.4e-204 715.3 1008 45.6
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 5.4e-203 712.2 876 48.6
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 5.1e-201 705.7 1016 43.6
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 8.7e-201 704.9 900 45.8
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 5.6e-200 702.2 733 54.6
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.6e-199 700.7 877 46.0
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 3.2e-195 686.4 697 54.1
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 4.3e-184 649.4 714 52.8
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 2.8e-183 646.7 875 45.3
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 3.4e-181 639.8 992 41.6
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 4.2e-179 632.9 624 54.5
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 2.7e-178 630.2 620 53.9
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 1.5e-160 571.2 687 48.8
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.7e-148 531.2 480 59.4
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 5.7e-144 516.2 939 37.3
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 6.3e-143 512.7 1080 34.4
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 2.1e-138 497.7 955 37.1
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 8.8e-137 492.3 842 38.8
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 3.4e-136 490.3 966 36.5
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 1.5e-107 395.2 1030 30.1
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 5.1e-100 370.2 410 50.5
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 3.7e-66 257.7 954 27.9
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 1.7e-50 205.7 479 30.5
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 2.5e-46 191.8 287 44.6
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 5.7e-43 180.6 419 31.0
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 3.2e-38 164.9 249 36.9
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.0e-28 133.3 138 52.2
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 6.3e-26 124.0 183 44.8
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 4.5e-24 117.9 311 28.9
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.9e-22 112.5 282 27.0
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 9.4e-22 110.2 194 41.8
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 2.8e-18 98.6 84 60.7
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.2e-16 93.2 190 27.4
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 3.0e-12 78.6 108 43.5
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 5.0e-07 61.2 152 31.6


User provided reference genes

Program Settings