Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 2.8e-143 511.9 252 100.0
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 4.7e-135 484.6 238 99.6
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.1e-66 256.5 240 57.1
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 2.6e-61 239.6 234 54.3
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.7e-61 238.0 229 51.5
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 1.0e-60 237.7 233 53.2
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.5e-60 235.0 229 51.5
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 2.5e-59 233.0 245 50.6
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 5.5e-59 231.9 235 50.2
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 9.7e-56 221.1 233 52.8
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 2.4e-54 216.5 233 51.5
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.3e-52 210.7 232 48.7
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.1e-51 207.6 243 46.1
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 3.2e-51 206.1 232 47.8
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 4.2e-51 205.7 230 45.2
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 4.7e-50 202.2 238 45.0
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.8e-49 200.3 234 47.9
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 3.0e-49 199.5 243 45.7
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 6.8e-49 198.4 239 48.1
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 2.0e-48 196.8 253 43.9
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.0e-48 196.8 231 47.2
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 3.4e-48 196.1 235 47.7
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 4.4e-48 195.7 229 48.5
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 5.7e-48 195.3 239 46.4
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 5.7e-48 195.3 251 43.8
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 1.7e-47 193.7 247 42.1
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.2e-47 193.4 227 44.9
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.2e-47 193.4 236 48.3
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 4.8e-47 192.2 246 47.2
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 6.3e-47 191.8 227 44.5
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 8.3e-47 191.4 274 40.9
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-46 190.3 229 46.3
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 5.3e-46 188.7 231 46.8
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 7.0e-46 188.3 240 45.0
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 9.1e-46 188.0 245 43.7
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.6e-45 187.2 240 44.6
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.0e-44 184.5 243 43.2
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.7e-44 183.7 237 43.5
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 3.8e-44 182.6 227 44.5
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 6.5e-44 181.8 239 42.7
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 6.5e-44 181.8 244 44.7
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.5e-43 180.6 237 43.9
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.9e-43 180.3 244 41.4
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.5e-43 178.7 233 44.2
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 2.1e-42 176.8 229 44.1
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 2.1e-42 176.8 230 43.5
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.1e-42 176.8 242 44.2
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.1e-42 176.8 242 44.2
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.6e-42 176.0 233 43.8
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 3.0e-41 172.9 261 40.6
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.5e-40 170.6 229 43.2
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 9.8e-40 167.9 246 40.7
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.8e-39 166.4 242 40.9
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 8.3e-39 164.9 231 41.6
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 8.3e-39 164.9 231 40.7
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-38 164.5 231 42.4
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.1e-38 164.5 242 42.1
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.4e-38 164.1 270 37.0
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.8e-38 163.7 233 42.5
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 4.1e-38 162.5 231 41.1
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 5.4e-38 162.2 227 43.2
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.6e-37 160.6 229 41.5
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.7e-37 159.8 232 41.8
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 2.7e-37 159.8 248 40.3
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 2.7e-37 159.8 233 42.1
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 4.5e-37 159.1 232 40.5
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.0e-36 157.9 219 42.0
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.7e-36 157.1 238 39.9
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.7e-36 157.1 236 40.3
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 2.9e-36 156.4 258 37.6
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 5.0e-36 155.6 238 39.1
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 5.0e-36 155.6 238 39.1
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 5.0e-36 155.6 262 37.4
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.5e-35 154.1 231 42.4
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.9e-35 153.7 265 37.7
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 4.2e-35 152.5 258 37.2
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 4.2e-35 152.5 233 39.1
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 7.2e-35 151.8 228 41.7
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 7.2e-35 151.8 165 48.5
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 2.8e-34 149.8 162 49.4
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 3.6e-34 149.4 235 40.0
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.3e-33 146.7 242 40.1
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 8.9e-33 144.8 162 46.3
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.1e-30 137.9 278 34.2
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.4e-30 137.5 247 37.2
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 1.4e-30 137.5 231 35.9
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.2e-30 136.3 229 37.1
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 4.1e-30 136.0 231 38.1
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 5.4e-30 135.6 232 37.5
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.6e-29 134.0 233 38.2
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.6e-29 134.0 152 46.7
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.6e-29 134.0 229 36.2
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 4.5e-29 132.5 232 38.8
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 7.8e-29 131.7 232 37.9
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.0e-28 131.3 232 37.9
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.3e-28 131.0 232 37.1
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.3e-28 131.0 232 37.1
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.7e-28 130.6 236 39.0
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 2.3e-28 130.2 235 36.2
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 1.5e-27 127.5 239 34.3
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.9e-27 127.1 208 38.9
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.9e-27 127.1 208 38.9
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 3.3e-27 126.3 232 36.6
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 4.3e-27 125.9 234 35.0
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 5.6e-27 125.6 254 36.2
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.3e-25 120.2 248 35.9
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 8.9e-25 118.2 232 35.3
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 5.8e-24 115.5 156 45.5
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.7e-23 114.0 229 33.2
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 1.7e-23 114.0 108 52.8
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.2e-21 107.8 233 32.2
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 2.7e-21 106.7 243 32.5
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.7e-20 104.0 152 40.1
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 1.7e-20 104.0 117 48.7
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 4.3e-19 99.4 98 54.1
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 5.6e-19 99.0 228 30.7
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.2e-18 97.8 283 28.3
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.5e-16 88.6 251 27.5
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 1.7e-15 87.4 155 36.1
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 1.9e-14 84.0 208 27.9
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 2.4e-14 83.6 199 28.1
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 7.8e-13 78.6 187 32.6
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 1.7e-12 77.4 219 28.3
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 3.0e-12 76.6 305 24.9
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.0e-12 76.6 156 33.3
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 8.6e-12 75.1 152 32.2
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 8.6e-12 75.1 242 26.0
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 1.1e-11 74.7 241 26.1
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.5e-11 74.3 184 32.6
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 2.5e-11 73.6 146 37.7
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-10 70.9 224 28.6
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 2.1e-10 70.5 145 29.7
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 8.1e-10 68.6 178 33.1
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.4e-09 67.8 155 31.0
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 5.2e-09 65.9 117 29.1
FAN26G1922 Fragaria x ananassa HOM05D003151 ORTHO05D003723 4.4e-08 62.8 45 62.2
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.3e-07 61.2 163 32.5
FAN26G3264 Fragaria x ananassa HOM05D003151 ORTHO05D003723 1.7e-07 60.8 45 60.0
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 2.2e-07 60.5 133 30.1
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 2.2e-07 60.5 137 29.2
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 2.2e-07 60.5 133 30.1
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 3.7e-07 59.7 283 25.4
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 1.4e-06 57.8 119 28.6
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 3.2e-06 56.6 45 55.6
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.2e-06 55.1 160 28.8


User provided reference genes

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