Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 2.1e-66 255.4 115 100.0
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 4.7e-66 254.2 115 99.1
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 4.7e-66 254.2 115 99.1
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 1.4e-65 252.7 115 98.3
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.5e-64 249.2 115 95.7
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 2.0e-64 248.8 115 95.7
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 2.0e-64 248.8 115 95.7
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 2.6e-64 248.4 115 95.7
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 2.6e-64 248.4 115 95.7
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 2.6e-64 248.4 114 95.6
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 3.4e-64 248.1 115 94.8
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 3.4e-64 248.1 115 95.7
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 4.4e-64 247.7 115 95.7
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 94.8
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 95.7
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 93.0
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 1.7e-63 245.7 115 94.8
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 1.7e-63 245.7 115 95.7
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.7e-63 245.7 115 95.7
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 93.9
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.0
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.9
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.0
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.0
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 6.4e-63 243.8 115 94.8
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 6.4e-63 243.8 115 93.0
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 6.4e-63 243.8 115 95.7
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.0
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.0
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.9
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 94.8
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.4e-62 242.7 115 93.9
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.4e-62 242.7 115 92.2
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 93.9
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 92.2
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 92.2
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 93.9
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 92.2
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 92.2
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 92.2
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 92.2
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 91.3
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.1e-62 240.4 114 91.2
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 91.3
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 91.3
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 92.2
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 90.4
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 89.6
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 90.4
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 88.7
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 90.4
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 88.7
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 91.3
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 88.7
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 88.7
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 87.8
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 87.8
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 87.8
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 87.8
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 89.6
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 88.7
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 88.7
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 88.7
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 87.8
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 87.8
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 87.8
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 87.8
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 87.8
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 6.6e-60 233.8 135 80.7
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 87.0
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.0
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.0
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 86.1
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 85.2
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 4.7e-58 227.6 112 91.1
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 4.7e-58 227.6 112 91.1
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 4.7e-58 227.6 134 78.4
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 86.1
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 86.1
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 83.5
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.2e-56 223.0 105 94.3
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 2.6e-56 221.9 105 93.3
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 7.6e-56 220.3 105 92.4
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 4.2e-54 214.5 114 81.6
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.2e-54 214.5 115 80.0
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 7.1e-54 213.8 105 90.5
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.6e-53 212.6 113 80.5
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.6e-53 212.6 113 80.5
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.6e-53 212.6 112 83.9
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 2.1e-53 212.2 105 86.7
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 3.5e-53 211.5 105 86.7
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.0e-52 209.9 105 85.7
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 3.0e-52 208.4 128 76.6
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 74.8
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 3.3e-51 204.9 115 78.3
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 2.1e-50 202.2 112 76.8
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 2.1e-50 202.2 115 75.7
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 2.8e-50 201.8 112 76.8
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 2.8e-50 201.8 112 76.8
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 3.6e-50 201.4 98 92.9
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.1e-49 199.9 115 73.0
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.1e-49 198.4 114 72.8
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.0e-48 195.7 114 72.8
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.4e-48 194.5 130 68.5
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.1e-46 189.9 114 71.1
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.9e-46 189.1 115 69.6
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 3.5e-45 184.9 88 95.5
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 6.0e-45 184.1 115 68.7
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 3.9e-44 181.4 180 53.3
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 5.6e-43 177.6 115 73.9
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 2.1e-42 175.6 88 90.9
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.1e-42 175.6 93 84.9
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.1e-41 173.3 90 87.8
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.4e-41 172.9 80 96.2
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.8e-41 172.6 114 69.3
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 3.1e-41 171.8 84 92.9
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 5.3e-41 171.0 80 93.8
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 9.0e-41 170.2 80 93.8
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 9.0e-41 170.2 88 86.4
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.4e-40 168.3 82 91.5
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.3e-39 166.4 115 56.5
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 2.9e-39 165.2 81 87.7
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 6.4e-39 164.1 79 89.9
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 4.2e-38 161.4 80 86.2
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 5.5e-38 161.0 94 77.7
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.1e-37 159.1 84 85.7
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.8e-36 156.0 80 83.8
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 5.1e-36 154.5 81 81.5
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.5e-35 152.9 81 82.7
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.5e-35 152.1 77 88.3
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 2.0e-32 142.5 110 56.4
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 7.1e-30 134.0 111 53.2
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 8.2e-26 120.6 64 84.4
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.5e-24 116.3 61 78.7
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.1e-22 110.2 56 87.5
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 2.5e-22 109.0 114 46.5
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 3.2e-22 108.6 97 48.5
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 4.6e-21 104.8 113 45.1
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 4.6e-21 104.8 71 64.8
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 6.7e-20 100.9 54 83.3
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 2.8e-18 95.5 113 44.2
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 1.8e-17 92.8 49 77.6
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 3.1e-17 92.0 54 77.8
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 9.0e-17 90.5 117 38.5
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 1.2e-16 90.1 64 56.2
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 3.0e-12 75.5 104 39.4
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 8.8e-12 73.9 105 36.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 6.3e-10 67.8 62 56.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 5.3e-09 64.7 112 33.0
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 4.5e-08 61.6 115 29.6
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 7.7e-08 60.8 112 33.0
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 7.7e-08 60.8 113 26.5
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.3e-07 60.1 112 29.5
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 1.7e-07 59.7 115 27.8
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 5.0e-07 58.2 113 31.0
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 1.1e-06 57.0 88 35.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 1.4e-06 56.6 114 28.9
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 2.5e-06 55.8 114 26.3
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 9.4e-06 53.9 112 25.0


User provided reference genes

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