Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 0.0e+00 1448.3 742 100.0
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 6.5e-225 784.6 746 56.7
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 4.2e-224 781.9 746 56.4
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.9e-217 759.2 737 56.2
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 8.2e-204 714.5 754 53.8
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 8.2e-204 714.5 741 51.6
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 9.1e-203 711.1 752 52.1
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 3.5e-202 709.1 881 47.7
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.0e-201 707.6 754 53.4
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.7e-201 706.8 748 52.0
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.5e-200 703.0 746 52.0
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 7.0e-195 684.9 754 50.8
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.2e-194 684.1 759 51.6
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 4.5e-194 682.2 766 50.5
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.2e-191 674.1 746 50.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 2.1e-191 673.3 746 50.0
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.0e-190 671.0 755 50.2
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.4e-190 670.6 729 49.7
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 4.0e-190 669.1 737 51.0
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 2.6e-189 666.4 719 52.9
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.7e-188 663.7 751 51.1
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 1.4e-187 660.6 763 50.7
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.8e-187 660.2 776 50.6
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 3.1e-187 659.4 597 59.3
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 5.4e-187 658.7 765 49.4
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 5.4e-187 658.7 762 50.1
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 7.0e-187 658.3 776 50.3
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.2e-186 657.5 743 49.3
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.5e-186 655.6 776 50.1
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.5e-186 655.6 775 50.6
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.9e-185 652.9 748 48.3
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.8e-185 652.5 748 48.3
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 3.3e-184 649.4 767 47.2
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 9.5e-184 647.9 741 50.5
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.8e-182 643.7 751 47.3
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.2e-178 630.9 753 49.7
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 3.5e-178 629.4 751 48.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.9e-177 625.9 748 47.3
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 8.6e-177 624.8 721 50.5
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 9.5e-176 621.3 765 47.6
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 4.0e-174 615.9 767 47.6
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 8.9e-174 614.8 770 47.3
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 2.9e-172 609.8 711 50.6
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 6.4e-172 608.6 753 46.2
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 3.2e-171 606.3 645 54.3
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 5.4e-171 605.5 716 47.8
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.2e-167 592.0 725 46.5
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 8.1e-167 591.7 641 51.8
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.1e-166 591.3 730 46.7
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 5.2e-166 589.0 752 46.3
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.5e-165 587.4 729 46.0
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.4e-165 585.9 725 46.6
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.7e-164 583.9 726 46.1
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.2e-164 583.6 725 46.5
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.2e-164 583.6 726 46.3
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 6.4e-164 582.0 720 46.8
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.1e-163 581.3 756 45.5
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.6e-162 577.4 735 46.8
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 4.6e-162 575.9 736 46.5
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.3e-161 574.3 724 45.3
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.9e-161 572.8 759 44.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 8.6e-161 571.6 735 45.6
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.6e-159 566.2 750 45.5
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.4e-158 564.3 734 44.8
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 7.6e-157 558.5 729 43.5
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 4.9e-156 555.8 748 44.1
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 6.4e-156 555.4 759 43.7
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.1e-155 552.0 729 45.3
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.8e-150 537.3 804 41.9
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 7.6e-149 531.9 751 43.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 7.6e-149 531.9 721 44.0
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.3e-148 531.2 570 54.6
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 2.9e-148 530.0 569 55.0
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.4e-147 527.7 746 42.0
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 3.2e-147 526.6 724 43.5
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 6.0e-146 522.3 749 41.9
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.8e-146 521.9 724 43.8
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 2.3e-145 520.4 722 42.4
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.9e-144 517.3 713 44.5
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 7.3e-144 515.4 755 42.9
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 9.6e-144 515.0 730 43.2
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 8.1e-143 511.9 544 52.2
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.3e-140 504.6 739 40.5
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.9e-140 503.4 757 41.5
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.8e-140 503.1 720 41.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.9e-140 502.7 740 40.9
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 9.3e-139 498.4 419 61.3
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 5.6e-136 489.2 719 42.6
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.8e-132 476.5 606 47.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 8.4e-132 475.3 441 55.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.1e-131 474.9 722 40.6
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-127 461.1 742 40.6
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.4e-126 458.0 741 38.5
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.0e-125 454.1 720 39.9
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.2e-123 446.4 721 40.2
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.1e-122 444.1 726 39.9
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.7e-122 443.7 728 40.4
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 6.1e-122 442.6 728 40.2
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.0e-121 440.3 737 38.8
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 7.4e-120 435.6 719 38.8
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 2.8e-119 433.7 508 50.2
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.4e-118 431.4 751 38.6
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.4e-118 430.6 584 43.3
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 9.0e-118 428.7 727 38.7
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.2e-117 428.3 464 52.6
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 5.5e-115 419.5 714 37.8
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 3.3e-112 410.2 709 37.0
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.3e-112 409.8 709 38.4
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.8e-111 407.1 726 37.9
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 5.1e-105 386.3 433 48.5
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 8.2e-103 379.0 538 43.9
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 2.0e-101 374.4 581 39.6
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.2e-100 370.9 732 35.5
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.5e-99 366.3 380 53.2
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.4e-94 350.9 727 35.2
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.6e-93 347.4 492 42.7
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.5e-93 347.1 596 36.2
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.5e-91 340.9 744 34.3
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 2.8e-87 327.4 300 58.0
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.8e-84 317.0 372 46.0
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 3.2e-83 313.9 364 48.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.7e-74 283.5 396 43.4
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.3e-71 275.4 555 34.6
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 4.1e-70 270.4 732 29.8
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.3e-59 233.8 171 66.7
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 5.2e-57 226.9 824 26.2
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.4e-56 223.8 619 28.4
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.7e-55 221.9 398 38.9
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.8e-49 201.8 141 68.1
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.9e-47 193.7 243 44.0
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.0e-45 186.8 257 44.4
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 7.6e-40 169.9 221 45.2
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.1e-38 166.0 492 29.5
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 3.2e-38 164.5 123 62.6
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 7.8e-37 159.8 284 34.5
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.0e-36 159.5 265 39.2
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-35 156.0 123 61.8
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.3e-35 153.3 769 23.8
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.8e-33 148.7 506 26.1
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 2.4e-25 121.7 148 45.3
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.9e-23 114.8 107 51.4
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.0e-20 106.3 208 34.6
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.9e-19 102.1 201 32.3
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 9.6e-19 99.8 332 28.3
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.1e-14 83.6 236 30.5
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 7.1e-14 83.6 145 37.9
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 1.2e-13 82.8 183 34.4
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.7e-13 81.6 320 27.2
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.6e-13 80.9 181 30.4
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.3e-12 79.3 139 34.5
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.3e-12 78.6 96 47.9
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 7.4e-11 73.6 95 40.0
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.3e-10 72.8 65 61.5
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 6.3e-10 70.5 47 61.7
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 2.4e-09 68.6 49 65.3
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 4.5e-08 64.3 73 38.4
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 4.5e-08 64.3 49 61.2
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.2e-07 62.0 140 33.6
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 6.5e-07 60.5 76 43.4
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 7.2e-06 57.0 154 31.8


User provided reference genes

Program Settings