Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 3.0e-102 375.2 189 100.0
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 6.3e-76 287.7 168 81.5
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.1e-75 287.0 170 80.0
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.4e-75 285.8 170 79.4
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 3.8e-73 278.5 170 78.2
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 5.0e-73 278.1 170 80.6
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.5e-72 276.6 170 77.1
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.5e-72 276.6 170 77.1
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.9e-72 276.2 165 78.2
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.9e-72 276.2 170 75.3
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.9e-72 276.2 170 75.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 3.3e-72 275.4 170 77.6
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 5.6e-72 274.6 170 76.5
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.6e-71 273.1 166 79.5
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 8.0e-71 270.8 165 73.9
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.0e-70 270.4 157 82.2
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.0e-70 270.4 157 82.2
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.4e-70 270.0 170 73.5
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.8e-70 269.6 165 77.6
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.8e-70 269.6 170 72.9
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.8e-70 269.6 169 72.8
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.3e-70 269.2 170 76.5
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 3.1e-70 268.9 165 77.0
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 4.0e-70 268.5 157 80.9
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 5.2e-70 268.1 170 74.7
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 6.8e-70 267.7 165 76.4
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 8.9e-70 267.3 166 73.5
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.2e-69 266.9 162 78.4
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.2e-69 266.9 165 75.8
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.2e-69 266.9 165 75.8
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.5e-69 266.5 207 65.2
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.5e-69 266.5 207 65.2
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.0e-69 266.2 170 73.5
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 2.6e-69 265.8 170 75.3
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.4e-69 265.4 164 76.2
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.4e-69 265.4 177 70.1
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.8e-69 264.6 165 75.8
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.3e-68 263.5 170 72.9
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.2e-68 262.7 199 65.8
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 2.2e-68 262.7 170 72.9
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.9e-68 262.3 165 77.6
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 3.7e-68 261.9 157 79.0
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.9e-67 259.6 170 70.0
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 4.1e-67 258.5 169 72.8
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 5.4e-67 258.1 165 73.3
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-66 256.9 165 72.7
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-66 256.9 165 72.7
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.6e-66 256.5 170 73.5
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 3.5e-66 255.4 165 72.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 7.8e-66 254.2 165 73.9
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.3e-65 252.7 165 70.9
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 3.0e-65 252.3 165 76.4
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 3.9e-65 251.9 202 66.3
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 5.0e-65 251.5 170 70.6
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 5.0e-65 251.5 157 77.1
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 8.6e-65 250.8 219 59.8
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.9e-64 249.6 170 69.4
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 4.3e-64 248.4 170 68.8
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 9.5e-64 247.3 165 73.3
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.2e-63 246.9 163 72.4
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.6e-63 246.5 165 72.7
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.8e-63 245.7 165 72.1
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 2.8e-63 245.7 165 70.9
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.1e-62 243.8 165 71.5
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.1e-62 242.3 166 71.7
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.8e-62 241.1 170 69.4
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 8.9e-62 240.7 185 66.5
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.2e-61 240.4 158 72.2
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.2e-61 240.4 158 71.5
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 2.6e-61 239.2 159 71.7
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.6e-61 239.2 194 61.9
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 4.4e-61 238.4 212 58.5
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.8e-61 238.0 158 71.5
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 7.5e-61 237.7 158 69.6
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 9.8e-61 237.3 158 71.5
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 4.9e-60 235.0 162 67.3
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 4.1e-59 231.9 158 69.0
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 4.1e-59 231.9 158 69.0
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 5.4e-59 231.5 157 68.2
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 5.4e-59 231.5 165 66.7
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.1e-58 229.6 157 67.5
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.1e-58 229.6 157 67.5
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.1e-58 229.6 157 67.5
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 2.1e-58 229.6 163 66.3
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.1e-58 229.6 170 65.3
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 3.5e-58 228.8 158 67.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 3.5e-58 228.8 162 65.4
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.5e-58 228.8 162 64.2
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 6.0e-58 228.0 162 66.0
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 7.8e-58 227.6 162 66.0
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.7e-57 226.5 162 63.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.3e-57 226.1 158 65.2
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.0e-57 225.7 158 66.5
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 5.1e-57 224.9 158 63.3
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 8.6e-57 224.2 178 63.5
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.1e-56 223.8 160 63.8
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.5e-56 223.4 160 63.8
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.9e-56 223.0 158 62.7
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.9e-56 223.0 157 65.6
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.3e-56 222.2 155 64.5
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.6e-55 219.9 158 65.8
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 2.1e-55 219.5 163 58.9
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.6e-55 218.8 157 62.4
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.2e-55 218.0 163 60.7
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.8e-54 216.5 144 68.1
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.3e-54 216.1 164 61.6
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 3.1e-54 215.7 162 62.3
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.5e-53 213.4 165 59.4
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 5.8e-53 211.5 158 59.5
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 3.7e-52 208.8 153 62.1
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.2e-50 203.8 151 64.2
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 3.5e-50 202.2 157 56.7
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.3e-48 195.3 158 61.4
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-47 193.7 158 57.0
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.1e-47 193.0 127 72.4
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 6.2e-47 191.4 157 56.1
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.8e-46 188.0 157 55.4
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.2e-45 187.2 122 68.9
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-45 186.0 172 51.7
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 9.9e-45 184.1 166 48.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.3e-44 183.7 145 58.6
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.2e-43 178.7 170 50.6
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.2e-42 177.2 154 51.9
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 2.3e-41 172.9 191 50.8
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 5.6e-40 168.3 142 49.3
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-39 167.2 131 58.8
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 6.2e-39 164.9 128 66.4
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 3.1e-38 162.5 158 51.9
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 4.0e-38 162.2 158 51.9
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 2.0e-37 159.8 157 46.5
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-37 158.3 157 49.7
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 9.9e-37 157.5 156 45.5
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-36 155.6 127 55.1
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.4e-36 154.5 133 54.9
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-35 154.1 123 57.7
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 2.4e-35 152.9 154 49.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 6.0e-34 148.3 154 39.6
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 6.0e-34 148.3 83 84.3
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-33 146.7 134 50.7
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.3e-33 146.4 83 83.1
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.6e-32 141.7 163 45.4
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.3e-32 141.4 117 54.7
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 9.6e-32 141.0 86 79.1
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.1e-31 137.9 116 55.2
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 2.9e-28 129.4 101 58.4
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.7e-25 118.2 150 40.7
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.6e-21 104.8 85 57.6
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 7.6e-21 104.8 91 54.9
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 9.9e-21 104.4 81 60.5
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.2e-20 103.2 83 60.2
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.2e-20 103.2 81 55.6
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.1e-14 84.3 67 58.2
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 5.8e-13 78.6 162 30.9
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-11 72.8 106 36.8
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 1.1e-08 64.3 55 60.0
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 1.1e-08 64.3 55 60.0
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.9e-08 63.5 54 61.1
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.5e-08 63.2 103 37.9


User provided reference genes

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