Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1649.8 810 100.0
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1454.1 810 86.7
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1436.4 810 85.6
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1426.4 810 85.3
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1406.7 811 83.6
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1397.1 810 83.1
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1396.3 815 82.6
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1395.9 815 82.9
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1394.0 815 82.9
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1393.3 810 83.1
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1387.9 811 81.8
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1386.3 808 82.7
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1384.8 815 82.8
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1380.5 811 82.5
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1374.8 814 81.9
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1370.9 809 82.0
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1366.7 813 81.8
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1366.7 807 81.7
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1365.9 811 80.8
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1365.1 808 81.4
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1364.7 813 81.7
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1364.0 808 81.6
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1364.0 813 81.5
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1361.7 817 81.3
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1359.7 807 82.4
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1358.2 804 82.0
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1358.2 809 82.2
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1357.4 809 81.1
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1355.9 811 81.5
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1354.7 803 81.9
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1352.4 814 81.3
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1350.5 816 80.8
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1348.6 816 80.4
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1348.2 816 79.4
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1345.9 809 79.9
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1345.9 812 80.5
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1343.6 810 80.9
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1342.8 813 81.1
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1342.4 810 79.9
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1340.1 809 80.0
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1338.2 818 79.5
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1336.6 807 80.3
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1333.9 810 78.5
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1333.5 889 74.1
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1331.2 811 80.1
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1328.5 810 79.5
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1327.4 810 78.4
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1325.1 808 79.5
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1311.6 812 78.4
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1307.7 808 79.0
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1305.0 832 77.5
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1303.5 814 77.9
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1302.7 820 77.3
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1302.0 812 77.8
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1293.5 808 78.0
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1289.2 807 77.7
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1286.9 806 77.0
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 806 77.4
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 806 76.9
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1280.0 808 76.6
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1279.6 807 77.1
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1279.2 805 77.0
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 807 76.7
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 796 77.0
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1278.5 806 76.4
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1277.7 806 76.6
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1277.7 806 76.6
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1277.3 806 77.2
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1276.5 805 76.4
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 807 76.7
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1275.0 807 76.6
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1271.1 806 76.2
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1266.9 818 75.7
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1266.1 808 76.5
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 810 76.2
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1261.5 786 78.2
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1258.0 807 76.0
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1257.7 807 75.3
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1255.7 808 75.6
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1255.0 801 75.8
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1254.6 807 75.7
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1248.8 807 75.3
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1246.9 808 74.6
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1246.9 813 75.6
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 814 75.2
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1243.8 808 75.1
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1241.9 862 71.6
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1234.9 816 74.1
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 863 70.8
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1230.3 812 74.4
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1228.4 807 74.2
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1224.5 810 74.6
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1220.7 869 70.1
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1213.0 813 75.3
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1207.6 811 71.9
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1207.2 967 64.8
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 808 71.7
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1193.3 808 73.1
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1187.9 812 70.4
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 810 70.4
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1186.0 812 73.0
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1183.7 912 66.9
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1182.2 808 71.7
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1180.6 765 75.2
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1178.7 822 71.0
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1153.7 964 63.4
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1153.3 781 72.1
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1137.1 807 70.6
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1119.0 814 66.6
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1094.7 820 65.9
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1086.6 808 68.2
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 5.5e-312 1073.5 814 69.0
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 4.1e-297 1024.6 800 63.1
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 3.9e-292 1008.1 605 80.8
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 4.4e-283 978.0 805 61.5
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.2e-248 863.6 784 60.2
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 3.9e-191 672.5 857 44.7
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.4e-188 664.1 381 83.7
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 6.5e-170 602.1 835 40.6
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.0e-162 578.2 808 43.9
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.3e-146 524.6 941 34.6
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.8e-144 516.9 846 38.2
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 4.9e-125 453.0 471 52.2
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 5.2e-119 433.0 320 66.6
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 9.6e-113 412.1 248 77.8
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.6e-112 411.4 342 65.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 3.8e-85 320.5 237 68.4
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 6.3e-72 276.6 199 70.4
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 6.7e-66 256.5 173 72.8
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 7.7e-62 243.0 671 29.7
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.4e-47 194.9 141 70.2
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 2.7e-46 191.4 192 57.8
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.0e-42 179.5 103 80.6
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 7.5e-41 173.3 90 85.6
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.3e-37 162.5 270 41.5
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.6e-35 155.6 128 57.0
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.0e-34 152.9 108 67.6
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 6.6e-29 133.7 118 58.5
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.9e-28 132.1 100 66.0
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 7.3e-28 130.2 121 61.2
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.6e-27 129.0 181 44.2
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.1e-27 128.6 113 54.0
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.1e-27 128.6 80 76.2
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 5.2e-26 124.0 190 42.1
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.9e-24 118.2 172 43.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 8.3e-24 116.7 261 31.8
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 5.0e-21 107.5 69 75.4
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 5.0e-21 107.5 125 50.4
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 9.5e-20 103.2 68 75.0
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.2e-19 102.8 59 84.7
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.0e-17 95.5 73 63.0
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.9e-16 91.7 50 82.0
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 6.4e-16 90.5 43 88.4
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 6.6e-13 80.5 136 42.6
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 8.6e-13 80.1 51 82.4
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.9e-12 79.0 129 38.8
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 2.1e-11 75.5 59 52.5
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.7e-08 64.7 57 61.4
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.4e-08 63.9 57 61.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.4e-08 63.9 57 61.4
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 6.4e-08 63.9 34 91.2
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.1e-07 63.2 73 52.1
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.4e-07 62.0 54 63.0
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 2.4e-07 62.0 57 57.9
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.1e-07 60.5 54 61.1
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.1e-07 60.5 54 61.1
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.1e-07 60.5 54 61.1
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.1e-07 60.5 54 61.1
Rhsim05G0038700 Rhododendron simsii HOM05D031300 ORTHO05D339751 7.1e-07 60.5 79 46.8


User provided reference genes

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