Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.2e-200 703.0 364 100.0
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 3.1e-164 582.0 364 82.1
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 7.7e-163 577.4 364 80.5
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 2.9e-162 575.5 364 81.3
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.2e-161 570.9 364 80.8
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.2e-160 570.1 380 77.4
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 3.6e-160 568.5 365 80.0
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 4.7e-160 568.2 364 78.0
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 6.1e-160 567.8 364 80.8
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.4e-159 566.6 364 80.2
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.0e-159 565.5 364 80.5
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 6.8e-159 564.3 364 80.2
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 6.8e-159 564.3 357 80.1
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.5e-158 563.1 364 80.2
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 7.5e-158 560.8 364 78.3
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.8e-158 560.5 364 79.9
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.8e-158 560.5 364 79.9
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.7e-157 559.7 364 78.8
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 2.2e-157 559.3 364 79.7
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.2e-157 559.3 363 79.1
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 4.8e-157 558.1 364 78.6
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 5.4e-156 554.7 362 78.2
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.2e-155 553.5 368 78.5
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 3.5e-155 552.0 364 76.9
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 7.7e-155 550.8 364 78.6
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.8e-154 548.5 367 78.2
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 2.5e-153 545.8 364 76.9
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 3.3e-153 545.4 364 77.5
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 5.5e-153 544.7 367 76.6
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 7.2e-153 544.3 364 77.2
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 8.0e-152 540.8 374 75.7
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.4e-151 540.0 364 75.3
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.8e-151 539.7 385 72.5
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 2.0e-150 536.2 364 75.5
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 3.4e-150 535.4 364 75.8
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 4.4e-150 535.0 364 76.1
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.5e-150 534.3 365 76.2
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 7.5e-150 534.3 365 75.1
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 3.7e-149 531.9 364 73.6
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 8.3e-149 530.8 365 74.0
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 1.8e-148 529.6 365 75.9
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 4.1e-148 528.5 364 74.7
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 7.0e-148 527.7 364 74.5
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.6e-147 526.6 364 74.5
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 7.8e-147 524.2 363 74.7
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.7e-146 523.1 364 72.5
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 3.8e-146 521.9 364 72.0
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 8.6e-146 520.8 365 72.6
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 8.6e-146 520.8 364 73.6
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 3.3e-145 518.8 365 73.7
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 3.3e-145 518.8 364 71.2
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 4.3e-145 518.5 364 71.2
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 7.3e-145 517.7 364 71.2
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.6e-144 516.5 365 72.9
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.1e-144 516.2 366 74.6
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 8.0e-144 514.2 364 70.6
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.8e-143 513.1 361 73.4
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 5.2e-143 511.5 361 73.4
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 6.8e-143 511.1 364 73.4
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 1.5e-142 510.0 366 73.2
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 7.5e-142 507.7 361 73.1
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.1e-140 503.8 364 72.3
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 7.0e-140 501.1 366 70.5
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 6.0e-139 498.0 365 71.2
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 7.8e-139 497.7 356 71.6
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 5.0e-138 495.0 307 81.1
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.3e-137 491.9 364 73.1
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 7.3e-137 491.1 337 73.0
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 2.1e-136 489.6 364 69.5
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 2.1e-136 489.6 364 70.1
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 3.6e-136 488.8 365 71.2
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 3.6e-136 488.8 369 68.8
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 3.4e-134 482.3 364 68.4
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 7.5e-134 481.1 367 69.5
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.7e-133 479.9 365 71.0
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 8.3e-133 477.6 365 68.5
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 1.1e-132 477.2 364 67.3
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.1e-132 477.2 364 68.4
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 2.4e-132 476.1 366 68.6
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.1e-132 475.3 365 69.9
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.2e-131 473.8 366 68.3
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 2.1e-131 473.0 364 67.3
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 2.1e-131 473.0 366 68.3
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.1e-131 473.0 367 68.9
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 4.6e-131 471.9 364 69.5
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 1.7e-130 469.9 365 67.9
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 5.6e-129 464.9 390 63.8
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 7.3e-129 464.5 391 63.9
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 9.5e-129 464.2 372 67.2
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 3.1e-127 459.1 320 74.7
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 2.6e-126 456.1 333 72.1
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 5.8e-126 454.9 365 67.7
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 2.1e-120 436.4 366 63.4
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 3.8e-117 425.6 302 73.2
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 4.2e-116 422.2 379 60.2
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 1.2e-115 420.6 378 61.9
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 6.6e-114 414.8 277 75.8
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.1e-113 414.1 365 64.7
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 7.3e-113 411.4 369 61.5
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.1e-112 409.8 380 63.4
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 2.1e-112 409.8 360 62.8
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 6.9e-111 404.8 360 62.2
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.7e-109 400.2 357 61.1
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.2e-108 395.6 341 61.3
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 5.8e-102 375.2 385 51.4
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 3.5e-99 365.9 245 77.6
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 4.0e-95 352.4 308 59.1
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 2.9e-85 319.7 369 47.2
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 9.3e-84 314.7 377 47.2
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.1e-81 307.8 364 52.7
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.6e-80 303.9 277 59.6
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.5e-78 297.4 412 44.2
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 3.0e-74 283.1 308 53.6
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 8.2e-72 275.0 215 66.0
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 1.5e-70 270.8 173 79.2
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 5.0e-69 265.8 172 77.9
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 5.0e-69 265.8 197 68.5
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 7.2e-68 261.9 198 68.7
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.4e-63 247.7 215 62.3
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.7e-59 233.4 168 72.6
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 6.3e-56 222.2 162 73.5
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.2e-48 197.2 122 83.6
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.8e-48 196.1 148 72.3
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 5.4e-47 192.6 122 82.0
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 2.7e-46 190.3 309 42.1
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 5.5e-44 182.6 201 52.7
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.5e-41 174.5 141 68.8
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 2.0e-41 174.1 165 60.6
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 9.8e-41 171.8 250 40.8
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.7e-37 161.0 122 72.1
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.2e-35 154.8 177 45.8
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.8e-34 151.0 141 61.7
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 1.3e-32 144.8 141 61.0
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 5.9e-30 136.0 114 62.3
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 9.8e-25 118.6 87 69.0
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.7e-24 116.7 72 80.6
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 7.0e-23 112.5 394 26.1
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 5.0e-21 106.3 72 75.0
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.9e-18 95.5 77 61.0
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-15 86.3 133 35.3
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 3.1e-10 70.5 317 23.7


User provided reference genes

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