Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G968.9 Capsicum annuum HOM05D001758 ORTHO05D018856 4.1e-102 374.8 198 100.0
CAN.G453.10 Capsicum annuum HOM05D001758 ORTHO05D018856 1.6e-53 213.4 206 59.2
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 9.7e-43 177.6 100 91.0
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 2.2e-42 176.4 100 90.0
DCAR_008367 Daucus carota HOM05D001758 ORTHO05D004430 2.2e-42 176.4 146 66.4
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 2.2e-42 176.4 100 90.0
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 2.2e-42 176.4 100 90.0
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 2.2e-42 176.4 100 90.0
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 2.2e-42 176.4 100 90.0
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 2.8e-42 176.0 100 89.0
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 1.1e-41 174.1 100 88.0
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 1.1e-41 174.1 134 70.1
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 1.4e-41 173.7 134 69.4
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 1.4e-41 173.7 100 88.0
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 1.4e-41 173.7 102 87.3
Dinv38922 Davidia involucrata HOM05D001758 ORTHO05D004430 1.4e-41 173.7 100 88.0
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 1.4e-41 173.7 100 88.0
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 1.4e-41 173.7 100 88.0
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 1.4e-41 173.7 100 88.0
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 1.8e-41 173.3 100 88.0
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 2.4e-41 172.9 134 69.4
CSS0042527 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 3.1e-41 172.6 100 88.0
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 3.1e-41 172.6 100 87.0
COL.COLO4_34497 Corchorus olitorius HOM05D001758 ORTHO05D004430 3.1e-41 172.6 100 87.0
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 3.1e-41 172.6 134 69.4
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 3.1e-41 172.6 134 69.4
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 4.1e-41 172.2 100 87.0
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 4.1e-41 172.2 100 87.0
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 5.3e-41 171.8 100 87.0
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 5.3e-41 171.8 100 86.0
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 6.9e-41 171.4 100 87.0
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 6.9e-41 171.4 100 86.0
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 6.9e-41 171.4 100 86.0
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 6.9e-41 171.4 100 87.0
Lj8A218T22 Lonicera japonica HOM05D001758 ORTHO05D004430 6.9e-41 171.4 100 86.0
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 6.9e-41 171.4 100 86.0
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 6.9e-41 171.4 100 86.0
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 6.9e-41 171.4 100 86.0
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 9.1e-41 171.0 100 85.0
Nn5g30834 Nelumbo nucifera HOM05D001758 ORTHO05D004430 9.1e-41 171.0 100 86.0
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 1.2e-40 170.6 100 85.0
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 1.5e-40 170.2 134 68.7
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 1.5e-40 170.2 134 67.2
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 1.5e-40 170.2 100 85.0
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 1.5e-40 170.2 100 85.0
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 1.5e-40 170.2 100 85.0
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 1.5e-40 170.2 100 85.0
Sc01g0009710 Simmondsia chinensis HOM05D001758 ORTHO05D004430 1.5e-40 170.2 100 87.0
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 1.5e-40 170.2 100 85.0
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 1.5e-40 170.2 133 69.2
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 2.0e-40 169.9 100 86.0
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 2.0e-40 169.9 100 86.0
Cfa012203 Carpinus fangiana HOM05D001758 ORTHO05D004430 2.6e-40 169.5 100 85.0
Haze_08813 Corylus avellana HOM05D001758 ORTHO05D004430 2.6e-40 169.5 100 85.0
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 2.6e-40 169.5 134 67.2
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 2.6e-40 169.5 134 67.2
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 2.6e-40 169.5 134 67.2
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 2.6e-40 169.5 134 67.2
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 2.6e-40 169.5 100 87.0
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 2.6e-40 169.5 100 87.0
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 3.4e-40 169.1 134 67.9
Lsat_1_v5_gn_6_5441 Lactuca sativa HOM05D001758 ORTHO05D004430 3.4e-40 169.1 100 87.0
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 3.4e-40 169.1 100 84.0
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 3.4e-40 169.1 100 85.0
Actinidia33743 Actinidia chinensis HOM05D001758 ORTHO05D004430 4.5e-40 168.7 100 85.0
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 4.5e-40 168.7 134 66.4
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 4.5e-40 168.7 100 85.0
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 4.5e-40 168.7 134 67.9
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 5.9e-40 168.3 100 85.0
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 5.9e-40 168.3 100 84.0
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 5.9e-40 168.3 134 67.2
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 7.7e-40 167.9 100 83.0
ClCG01G002530 Citrullus lanatus HOM05D001758 ORTHO05D004430 7.7e-40 167.9 100 84.0
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 7.7e-40 167.9 134 67.2
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 7.7e-40 167.9 100 84.0
FvH4_5g02830 Fragaria vesca HOM05D001758 ORTHO05D004430 7.7e-40 167.9 100 83.0
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 7.7e-40 167.9 100 83.0
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 7.7e-40 167.9 100 83.0
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 7.7e-40 167.9 134 66.4
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 7.7e-40 167.9 100 84.0
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 7.7e-40 167.9 100 83.0
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 7.7e-40 167.9 134 66.4
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 7.7e-40 167.9 100 83.0
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 7.7e-40 167.9 134 67.2
Ah.07g196400 Amaranthus hybridus HOM05D001758 ORTHO05D004430 1.3e-39 167.2 100 85.0
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.3e-39 167.2 100 83.0
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 1.3e-39 167.2 100 83.0
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 1.3e-39 167.2 100 83.0
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 1.3e-39 167.2 100 84.0
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 1.3e-39 167.2 134 67.2
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 1.7e-39 166.8 134 66.4
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 1.7e-39 166.8 100 84.0
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 1.7e-39 166.8 100 83.0
TAR381G1011 Trochodendron aralioides HOM05D001758 ORTHO05D004430 2.2e-39 166.4 100 83.0
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 2.9e-39 166.0 100 83.0
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 2.9e-39 166.0 100 85.0
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 2.9e-39 166.0 100 85.0
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 2.9e-39 166.0 100 85.0
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 3.8e-39 165.6 100 83.0
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 3.8e-39 165.6 100 83.0
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 3.8e-39 165.6 100 83.0
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 3.8e-39 165.6 100 83.0
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 3.8e-39 165.6 100 82.0
Psat0s5381g0040 Pisum sativum HOM05D001758 ORTHO05D004430 5.0e-39 165.2 186 53.2
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 6.5e-39 164.9 100 83.0
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 6.5e-39 164.9 100 84.0
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 6.5e-39 164.9 100 81.0
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 8.5e-39 164.5 100 83.0
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 8.5e-39 164.5 100 83.0
Gohir.A08G184050 Gossypium hirsutum HOM05D001758 ORTHO05D004430 8.5e-39 164.5 100 82.0
Oeu042339.1 Olea europaea HOM05D001758 ORTHO05D004430 8.5e-39 164.5 134 65.7
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 1.1e-38 164.1 100 81.0
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 1.1e-38 164.1 153 62.1
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 1.1e-38 164.1 106 79.2
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 1.4e-38 163.7 100 82.0
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 1.9e-38 163.3 100 83.0
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 1.9e-38 163.3 100 83.0
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 1.9e-38 163.3 100 83.0
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 1.9e-38 163.3 100 83.0
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 1.9e-38 163.3 100 83.0
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 1.9e-38 163.3 134 64.9
unitig_62.g23539 Utricularia gibba HOM05D001758 ORTHO05D004430 1.9e-38 163.3 134 66.4
CDE08G1656 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 2.5e-38 162.9 134 64.9
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 3.2e-38 162.5 100 83.0
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 3.2e-38 162.5 100 80.0
CAN.G594.5 Capsicum annuum HOM05D000309 ORTHO05D000271 9.4e-38 161.0 101 84.2
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 1.6e-37 160.2 100 81.0
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 1.6e-37 160.2 100 82.0
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 1.6e-37 160.2 100 81.0
Pp3c14_2460 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.6e-37 160.2 121 69.4
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 1.6e-37 160.2 100 81.0
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 2.1e-37 159.8 100 80.0
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 2.7e-37 159.5 100 81.0
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 2.7e-37 159.5 100 81.0
Mapoly0002s0295 Marchantia polymorpha HOM05D001758 ORTHO05D004430 3.6e-37 159.1 121 69.4
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 4.7e-37 158.7 100 81.0
AagrBONN_evm.TU.Sc2ySwM_117.2557 Anthoceros agrestis HOM05D001758 ORTHO05D004430 4.7e-37 158.7 121 69.4
Lj2C182T2 Lonicera japonica HOM05D001758 ORTHO05D004430 4.7e-37 158.7 166 51.8
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 6.1e-37 158.3 100 79.0
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 6.1e-37 158.3 100 80.0
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 6.1e-37 158.3 100 79.0
Pp3c1_19340 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.0e-36 157.5 134 63.4
Pp3c2_18140 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.0e-36 157.5 121 67.8
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 1.4e-36 157.1 100 80.0
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 1.8e-36 156.8 100 78.0
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 1.8e-36 156.8 100 78.0
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 1.8e-36 156.8 100 78.0
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 1.8e-36 156.8 100 78.0
CBR_g10902 Chara braunii HOM05D001758 ORTHO05D004430 2.0e-35 153.3 121 66.1
SMO298G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D004430 2.0e-35 153.3 121 66.9
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 1.7e-34 150.2 100 75.0
CAN.G453.7 Capsicum annuum HOM05D001758 ORTHO05D004430 8.2e-34 147.9 93 79.6
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 7.0e-33 144.8 141 58.2
CAN.G1081.2 Capsicum annuum HOM05D001758 ORTHO05D004430 8.5e-31 137.9 86 82.6
CAN.G205.21 Capsicum annuum HOM05D001758 ORTHO05D018856 4.2e-30 135.6 221 44.8
MBI10_g48086_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 2.0e-27 126.7 134 54.5
Duzib068G1315 Durio zibethinus HOM05D001758 ORTHO05D004430 1.7e-26 123.6 81 74.1
Cpa.g.sc180.12 Carica papaya HOM05D001758 ORTHO05D004430 6.3e-26 121.7 74 82.4
MCO01G139 Micromonas commoda HOM05D001758 ORTHO05D004430 1.4e-25 120.6 123 52.0
DCAR_005565 Daucus carota HOM05D001758 ORTHO05D004430 2.0e-24 116.7 74 78.4
MBI10_g48303_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 4.5e-24 115.5 74 77.0
CAN.G458.13 Capsicum annuum HOM05D001758 ORTHO05D004430 6.5e-23 111.7 74 78.4
Psat6g071240 Pisum sativum HOM05D001758 ORTHO05D004430 8.5e-23 111.3 71 78.9
SEGI_09797 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 1.5e-22 110.5 74 77.0
CAN.G849.9 Capsicum annuum HOM05D001758 ORTHO05D004430 2.5e-22 109.8 73 75.3
CAN.G849.10 Capsicum annuum HOM05D001758 ORTHO05D004430 2.1e-21 106.7 70 78.6
Cfa025216 Carpinus fangiana HOM05D001758 ORTHO05D004430 8.8e-20 101.3 101 46.5
Cre11.g478156 Chlamydomonas reinhardtii HOM05D001758 ORTHO05D004430 2.0e-19 100.1 81 61.7
SHI07182 Sapria himalayana HOM05D000105 ORTHO05D000023 9.4e-14 81.3 100 51.0
CAN.G491.14 Capsicum annuum HOM05D001758 ORTHO05D004430 1.3e-10 70.9 44 84.1
Lsat_1_v5_gn_8_132701 Lactuca sativa HOM05D001758 ORTHO05D228890 1.7e-10 70.5 56 62.5
CAN.G1081.1 Capsicum annuum HOM05D001758 ORTHO05D018856 4.9e-10 68.9 48 72.9
CAN.G594.6 Capsicum annuum HOM05D001758 ORTHO05D018856 1.1e-09 67.8 48 75.0
Cfa024790 Carpinus fangiana HOM05D001758 ORTHO05D004430 2.4e-09 66.6 115 33.0
Actinidia27373 Actinidia chinensis HOM05D001758 ORTHO05D004430 4.1e-09 65.9 35 91.4
PRCOL_00003609 Prasinoderma coloniale HOM05D001758 ORTHO05D004430 9.2e-09 64.7 82 45.1
Lsat_1_v5_gn_7_97200 Lactuca sativa HOM05D000746 ORTHO05D000573 3.3e-06 56.2 41 65.9
Actinidia27374 Actinidia chinensis HOM05D001758 ORTHO05D004430 7.3e-06 55.1 54 50.0


User provided reference genes

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