Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 1.2e-106 389.8 188 100.0
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 8.5e-105 383.6 187 98.4
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 8.5e-105 383.6 187 98.4
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 1.0e-102 376.7 187 96.8
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.8e-102 375.9 187 96.8
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 1.3e-100 369.8 187 95.7
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.4e-94 349.7 187 89.3
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 3.3e-93 345.1 187 88.2
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 5.7e-93 344.4 187 88.2
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 3.7e-92 341.7 187 85.0
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 3.7e-92 341.7 187 85.0
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 3.7e-92 341.7 187 85.0
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 3.7e-92 341.7 187 85.0
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 6.3e-92 340.9 187 85.6
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 3.1e-91 338.6 191 85.9
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.2e-90 336.7 187 86.1
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 1.5e-90 336.3 187 84.5
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 7.7e-90 334.0 187 83.4
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 2.2e-89 332.4 191 84.3
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 1.6e-87 326.2 187 84.0
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 3.6e-87 325.1 192 81.8
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.0e-86 323.6 191 80.6
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.4e-86 323.2 191 82.2
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 3.0e-86 322.0 191 81.2
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 3.0e-86 322.0 191 81.2
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 3.0e-86 322.0 191 81.2
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-86 320.9 187 82.9
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 8.8e-86 320.5 190 81.1
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 2.6e-85 318.9 191 81.2
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 2.6e-85 318.9 187 81.3
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 3.3e-85 318.5 191 80.6
CAN.G511.9 Capsicum annuum HOM05D000216 ORTHO05D000634 1.1e-83 313.5 151 98.7
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.3e-83 311.2 182 83.0
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.6e-82 309.7 189 80.4
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 7.7e-82 307.4 187 80.7
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 6.5e-81 304.3 192 77.6
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 5.5e-80 301.2 189 77.8
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 8.2e-76 287.3 195 74.4
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.0e-70 268.9 179 77.7
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.0e-70 268.9 179 77.7
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.0e-70 268.9 179 77.7
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.0e-70 268.9 179 77.7
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 1.2e-69 266.9 187 70.1
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.2e-69 266.9 191 72.8
Lj1g0027665 Lotus japonicus HOM05D000216 ORTHO05D000634 2.0e-69 266.2 175 74.3
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 5.7e-69 264.6 187 70.1
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 5.7e-69 264.6 187 70.1
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 5.7e-69 264.6 187 70.1
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 5.7e-69 264.6 187 70.1
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 5.7e-69 264.6 187 70.1
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 2.4e-67 259.2 132 97.0
Atru.chr6.1615 Acer truncatum HOM05D000216 ORTHO05D000634 3.1e-67 258.8 145 82.1
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 3.1e-67 258.8 187 70.1
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 4.2e-64 248.4 135 88.9
Hund04025 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-63 246.1 155 76.1
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 1.7e-60 236.5 139 82.0
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.9e-60 235.0 180 67.8
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 6.3e-60 234.6 167 68.9
Solyc08g028910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.3e-60 234.2 131 87.0
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 1.2e-58 230.3 177 66.7
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 4.5e-58 228.4 147 76.9
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 7.8e-58 227.6 180 67.8
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 3.8e-57 225.3 150 74.0
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-55 220.3 130 82.3
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.6e-55 219.9 181 63.5
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.8e-55 219.2 134 79.9
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.0e-54 217.2 118 87.3
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 5.2e-54 214.9 129 81.4
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 5.2e-54 214.9 129 81.4
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 1.2e-53 213.8 128 82.8
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 1.2e-53 213.8 134 78.4
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 1.5e-53 213.4 119 83.2
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 9.8e-53 210.7 115 89.6
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.9e-52 209.1 119 85.7
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-51 207.2 115 87.8
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 4.1e-51 205.3 119 84.0
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 1.6e-50 203.4 113 86.7
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.0e-50 203.0 178 60.7
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 3.5e-50 202.2 115 85.2
Migut.K00966 Erythranthe guttata HOM05D000216 ORTHO05D000634 4.6e-50 201.8 143 71.3
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 5.9e-50 201.4 113 83.2
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.8e-50 201.1 170 64.1
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 1.3e-49 200.3 112 82.1
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 1.7e-49 199.9 109 89.0
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 5.0e-49 198.4 108 89.8
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.3e-48 195.7 117 78.6
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 5.6e-48 194.9 114 83.3
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 9.5e-48 194.1 119 77.3
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.6e-47 193.4 114 81.6
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 4.7e-47 191.8 185 59.5
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 8.9e-46 187.6 104 86.5
Gorai.013G018800 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.2e-43 179.1 142 67.6
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 7.0e-43 177.9 106 80.2
Gohir.D13G016950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.6e-42 175.3 142 66.2
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 7.8e-42 174.5 106 82.1
Oeu010681.1 Olea europaea HOM05D000216 ORTHO05D000634 1.7e-41 173.3 186 51.1
Gohir.A07G183950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.0e-41 172.6 103 79.6
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.1e-40 170.6 116 75.0
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.3e-38 162.9 114 71.1
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 3.1e-38 162.5 128 69.5
Lalb_Chr06g0173101 Lupinus albus HOM05D000216 ORTHO05D000634 4.4e-37 158.7 107 74.8
CAN.G213.14 Capsicum annuum HOM05D000216 ORTHO05D000634 1.0e-33 147.5 75 96.0
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 1.1e-32 144.1 101 71.3
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.5e-32 143.7 79 87.3
TPR.G26480 Trifolium pratense HOM05D000216 ORTHO05D000634 9.5e-32 141.0 87 75.9
Gorai.002G075300 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.8e-30 136.7 71 91.5
Lalb_Chr13g0292901 Lupinus albus HOM05D000216 ORTHO05D000634 1.8e-30 136.7 78 84.6
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 2.0e-29 133.3 79 82.3
HanXRQChr07g0188321 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-29 132.5 68 92.6
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 5.8e-29 131.7 77 84.4
AUR62041877 Chenopodium quinoa HOM05D000216 ORTHO05D000634 2.9e-28 129.4 96 71.9
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 6.4e-28 128.3 148 50.7
HanXRQChr00c0823g0577631 Helianthus annuus HOM05D000216 ORTHO05D000634 1.7e-25 120.2 62 90.3
Solyc05g020010.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 3.0e-25 119.4 64 90.6
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.7e-23 112.1 61 85.2
Lalb_Chr23g0274571 Lupinus albus HOM05D000216 ORTHO05D000634 4.7e-23 112.1 70 78.6
GSVIVG01030958001 Vitis vinifera HOM05D000216 ORTHO05D000634 8.1e-23 111.3 66 77.3
Nitab4.5_0004184g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 4.0e-22 109.0 83 68.7
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 1.2e-21 107.5 85 62.4
Oeu012802.1 Olea europaea HOM05D000216 ORTHO05D000634 2.2e-20 103.2 63 81.0
Solyc07g021290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.9e-20 102.8 52 92.3
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.2e-18 97.4 52 82.7
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-18 97.4 52 82.7
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 1.6e-18 97.1 154 37.0
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 3.5e-18 95.9 52 82.7
arahy.Tifrunner.gnm1.ann1.EI2YTD Arachis hypogaea HOM05D000890 ORTHO05D000697 1.3e-17 94.0 55 81.8
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 1.3e-17 94.0 50 84.0
CARHR056720 Cardamine hirsuta HOM05D000216 ORTHO05D000634 8.7e-17 91.3 48 89.6
HanXRQChr14g0436641 Helianthus annuus HOM05D000216 ORTHO05D000634 4.3e-16 89.0 50 74.0
Gorai.011G135800 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.2e-13 80.9 58 67.2
HPP92_016025 Vanilla planifolia HOM05D000216 ORTHO05D000634 5.8e-13 78.6 49 77.6
Gohir.D10G123250 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.2e-12 76.6 52 69.2
Migut.F01072 Erythranthe guttata HOM05D000216 ORTHO05D000634 3.8e-12 75.9 46 76.1
Lalb_Chr06g0173001 Lupinus albus HOM05D000216 ORTHO05D000634 8.4e-12 74.7 52 71.2
Aa31csc39G140 Aethionema arabicum HOM05D000216 ORTHO05D000634 2.7e-10 69.7 102 38.2
SEGI_15522 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 6.0e-10 68.6 77 48.1
Mapoly0087s0067 Marchantia polymorpha HOM05D000216 ORTHO05D000634 7.9e-10 68.2 74 44.6
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 1.8e-09 67.0 49 63.3
Solyc12g062650.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 9.6e-08 61.2 52 61.5
SGA_v2.0_scaffold69G23193 Striga asiatica HOM05D000216 ORTHO05D000634 9.6e-08 61.2 57 54.4
Migut.D01414 Erythranthe guttata HOM05D000216 ORTHO05D000634 3.7e-07 59.3 33 81.8
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 1.4e-06 57.4 38 73.7


User provided reference genes

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