Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G859.9 Capsicum annuum HOM05D003365 ORTHO05D003899 2.5e-113 412.1 215 100.0
CAN.G500.11 Capsicum annuum HOM05D003365 ORTHO05D003899 5.0e-77 291.6 165 87.3
PGSC0003DMG400029661 Solanum tuberosum HOM05D003365 ORTHO05D003899 2.5e-60 236.1 168 72.6
Sopen09g034680 Solanum pennellii HOM05D003365 ORTHO05D003899 7.3e-60 234.6 168 70.8
Solyc09g091790.3 Solanum lycopersicum HOM05D003365 ORTHO05D003899 1.6e-59 233.4 168 70.8
CAN.G186.14 Capsicum annuum HOM05D003365 ORTHO05D003899 1.0e-58 230.7 141 84.4
CAN.G8.3 Capsicum annuum HOM05D003365 ORTHO05D003899 2.0e-57 226.5 201 61.2
CAN.G572.29 Capsicum annuum HOM05D003365 ORTHO05D003899 4.6e-54 215.3 199 66.8
Nitab4.5_0004214g0020 Nicotiana tabacum HOM05D003365 ORTHO05D003899 2.6e-49 199.5 165 64.2
Nitab4.5_0002428g0050 Nicotiana tabacum HOM05D003365 ORTHO05D003899 3.4e-49 199.1 165 63.6
CAN.G1061.15 Capsicum annuum HOM05D000222 ORTHO05D012343 1.5e-44 183.7 165 62.4
Peaxi162Scf00047g00641 Petunia axillaris HOM05D003365 ORTHO05D003899 2.3e-42 176.4 165 55.8
CAN.G962.3 Capsicum annuum HOM05D000222 ORTHO05D012343 1.1e-28 131.0 145 61.4
CAN.G611.2 Capsicum annuum HOM05D000222 ORTHO05D012343 5.6e-28 128.6 103 67.0
Oeu022364.1 Olea europaea HOM05D003365 ORTHO05D003899 9.9e-25 117.9 158 40.5
Oeu006726.3 Olea europaea HOM05D003365 ORTHO05D003899 3.2e-23 112.8 146 41.1
Dinv38244 Davidia involucrata HOM05D003365 ORTHO05D003899 4.6e-22 109.0 141 45.4
CAN.G756.46 Capsicum annuum HOM05D000002 ORTHO05D000001 7.8e-22 108.2 94 63.8
SGA_v2.0_scaffold216G42379 Striga asiatica HOM05D003365 ORTHO05D003899 3.9e-21 105.9 156 39.7
Dinv04652 Davidia involucrata HOM05D003365 ORTHO05D003899 8.7e-21 104.8 109 48.6
CSS0049236 Camellia sinensis var. sinensis HOM05D003365 ORTHO05D003899 1.9e-20 103.6 118 46.6
Lsat_1_v5_gn_1_72781 Lactuca sativa HOM05D003365 ORTHO05D003899 3.3e-20 102.8 154 40.9
RcHm_v2.0_Chr4g0386021 Rosa chinensis HOM05D003365 ORTHO05D003899 5.6e-20 102.1 179 33.0
FvH4_4g00570 Fragaria vesca HOM05D003365 ORTHO05D003899 7.3e-20 101.7 129 38.8
FAN12G1463 Fragaria x ananassa HOM05D003365 ORTHO05D003899 7.3e-20 101.7 129 38.8
COL.COLO4_10278 Corchorus olitorius HOM05D003365 ORTHO05D003899 1.3e-19 100.9 160 37.5
MSTRG.24620 Avicennia marina HOM05D003365 ORTHO05D003899 2.1e-19 100.1 125 42.4
FAN22G2379 Fragaria x ananassa HOM05D003365 ORTHO05D003899 3.6e-19 99.4 125 39.2
Gohir.A09G204300 Gossypium hirsutum HOM05D003365 ORTHO05D003899 3.6e-19 99.4 128 38.3
TWI36G1690 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 1.1e-18 97.8 112 47.3
Gorai.006G221600 Gossypium raimondii HOM05D003365 ORTHO05D003899 1.8e-18 97.1 128 38.3
Migut.N00374 Erythranthe guttata HOM05D003365 ORTHO05D003899 2.4e-18 96.7 147 37.4
Gohir.D09G198000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 2.4e-18 96.7 124 39.5
HanXRQChr01g0022261 Helianthus annuus HOM05D003365 ORTHO05D003899 4.0e-18 95.9 123 39.0
Prupe.8G203400 Prunus persica HOM05D003365 ORTHO05D003899 4.0e-18 95.9 116 40.5
Thecc.04G205700 Theobroma cacao HOM05D003365 ORTHO05D003899 4.0e-18 95.9 123 41.5
CAN.G56.16 Capsicum annuum HOM05D000222 ORTHO05D003899 5.3e-18 95.5 92 55.4
Gohir.D02G123200 Gossypium hirsutum HOM05D003365 ORTHO05D003899 6.9e-18 95.1 103 46.6
Lj3g0005766 Lotus japonicus HOM05D003365 ORTHO05D003899 6.9e-18 95.1 129 38.8
TAR365G1159 Trochodendron aralioides HOM05D003365 ORTHO05D003899 6.9e-18 95.1 79 54.4
CiPaw.03G149600 Carya illinoinensis HOM05D003365 ORTHO05D003899 9.0e-18 94.7 87 54.0
CAN.G261.16 Capsicum annuum HOM05D000222 ORTHO05D000001 2.0e-17 93.6 109 56.9
Gorai.005G131100 Gossypium raimondii HOM05D003365 ORTHO05D003899 2.0e-17 93.6 87 49.4
Lalb_Chr12g0209691 Lupinus albus HOM05D003365 ORTHO05D003899 2.0e-17 93.6 87 47.1
Potri.003G178700 Populus trichocarpa HOM05D003365 ORTHO05D003899 2.0e-17 93.6 127 40.9
Prupe.1G006100 Prunus persica HOM05D003365 ORTHO05D003899 2.0e-17 93.6 145 37.2
Duzib151G0831 Durio zibethinus HOM05D003365 ORTHO05D003899 4.5e-17 92.4 114 44.7
Atru.chr4.1724 Acer truncatum HOM05D003365 ORTHO05D003899 5.8e-17 92.0 75 53.3
HanXRQChr01g0022241 Helianthus annuus HOM05D003365 ORTHO05D003899 7.6e-17 91.7 96 41.7
Sabra03G0131000 Salix brachista HOM05D003365 ORTHO05D003899 7.6e-17 91.7 148 39.2
arahy.Tifrunner.gnm1.ann1.E2CR6D Arachis hypogaea HOM05D003365 ORTHO05D003899 9.9e-17 91.3 92 42.4
Glyma.18G171400 Glycine max HOM05D003365 ORTHO05D003899 9.9e-17 91.3 95 46.3
Potri.001G049300 Populus trichocarpa HOM05D003365 ORTHO05D003899 9.9e-17 91.3 117 44.4
TWI75G0239 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 1.3e-16 90.9 101 47.5
CANSAT01G3135 Cannabis sativa HOM05D003365 ORTHO05D003899 1.7e-16 90.5 98 45.9
Lj1g0007670 Lotus japonicus HOM05D003365 ORTHO05D003899 1.7e-16 90.5 100 45.0
MD10G1165000 Malus domestica HOM05D003365 ORTHO05D003899 1.7e-16 90.5 79 49.4
FvH4_6g51520 Fragaria vesca HOM05D003365 ORTHO05D003899 2.2e-16 90.1 93 47.3
Medtr4g022320 Medicago truncatula HOM05D003365 ORTHO05D003899 2.2e-16 90.1 87 47.1
GSVIVG01028643001 Vitis vinifera HOM05D003365 ORTHO05D003899 2.2e-16 90.1 73 57.5
TPR.G9032 Trifolium pratense HOM05D003365 ORTHO05D003899 2.9e-16 89.7 69 56.5
Medtr7g058430 Medicago truncatula HOM05D003365 ORTHO05D003899 3.8e-16 89.4 157 33.8
Lalb_Chr19g0125591 Lupinus albus HOM05D003365 ORTHO05D003899 4.9e-16 89.0 87 48.3
Glyma.08G354400 Glycine max HOM05D003365 ORTHO05D003899 6.4e-16 88.6 106 46.2
Duzib138G0916 Durio zibethinus HOM05D003365 ORTHO05D003899 8.4e-16 88.2 83 48.2
VMungo1383G0959 Vigna mungo HOM05D003365 ORTHO05D003899 8.4e-16 88.2 106 44.3
MD04G1005700 Malus domestica HOM05D003365 ORTHO05D003899 1.1e-15 87.8 113 39.8
SHI01318 Sapria himalayana HOM05D003365 ORTHO05D003899 1.1e-15 87.8 118 43.2
Rhsim09G0055000 Rhododendron simsii HOM05D003365 ORTHO05D003899 1.9e-15 87.0 110 43.6
Gohir.A03G094000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 2.4e-15 86.7 163 36.8
Psat3g144800 Pisum sativum HOM05D003365 ORTHO05D003899 2.4e-15 86.7 104 42.3
Ciclev10023514m.g Citrus clementina HOM05D003365 ORTHO05D003899 3.2e-15 86.3 129 39.5
arahy.Tifrunner.gnm1.ann1.2FCG8X Arachis hypogaea HOM05D003365 ORTHO05D003899 4.2e-15 85.9 155 30.3
Cpa.g.sc8.160 Carica papaya HOM05D003365 ORTHO05D003899 4.2e-15 85.9 129 38.0
Eucgr.K02171 Eucalyptus grandis HOM05D003365 ORTHO05D003899 5.4e-15 85.5 136 39.0
QL09p054586 Quercus lobata HOM05D003365 ORTHO05D003899 5.4e-15 85.5 130 41.5
HanXRQChr09g0249321 Helianthus annuus HOM05D003365 ORTHO05D003899 1.2e-14 84.3 111 39.6
MBI10_g18941_MAGBIO Magnolia biondii HOM05D003365 ORTHO05D003899 1.2e-14 84.3 129 38.0
Potri.002G241900 Populus trichocarpa HOM05D003365 ORTHO05D003899 1.2e-14 84.3 144 38.2
Thecc.01G226500 Theobroma cacao HOM05D003365 ORTHO05D003899 2.1e-14 83.6 95 43.2
Eucgr.K02172 Eucalyptus grandis HOM05D003365 ORTHO05D003899 2.7e-14 83.2 139 37.4
FAN24G3306 Fragaria x ananassa HOM05D003365 ORTHO05D003899 2.7e-14 83.2 81 48.1
Actinidia09483 Actinidia chinensis HOM05D003365 ORTHO05D003899 3.5e-14 82.8 88 44.3
Carub.0003s2521 Capsella rubella HOM05D003365 ORTHO05D003899 3.5e-14 82.8 116 45.7
Ciclev10004856m.g Citrus clementina HOM05D003365 ORTHO05D003899 3.5e-14 82.8 126 38.9
Eucgr.L00369 Eucalyptus grandis HOM05D003365 ORTHO05D003899 3.5e-14 82.8 111 39.6
FAN15G1528 Fragaria x ananassa HOM05D003365 ORTHO05D003899 3.5e-14 82.8 83 48.2
FAN27G1822 Fragaria x ananassa HOM05D003365 ORTHO05D003899 3.5e-14 82.8 81 46.9
RcHm_v2.0_Chr6g0284931 Rosa chinensis HOM05D003365 ORTHO05D003899 3.5e-14 82.8 107 40.2
BolC3t17715H Brassica oleracea HOM05D003365 ORTHO05D003899 6.0e-14 82.0 168 35.7
Phvul.008G125500 Phaseolus vulgaris HOM05D003365 ORTHO05D003899 7.9e-14 81.6 70 52.9
BcaB03g14565 Brassica carinata HOM05D003365 ORTHO05D003899 1.0e-13 81.3 79 49.4
Lj2C1132T2 Lonicera japonica HOM05D003365 ORTHO05D003899 1.0e-13 81.3 126 38.9
ATR0736G227 Amborella trichopoda HOM05D003365 ORTHO05D003899 1.3e-13 80.9 88 46.6
ECA248G1941 Erigeron canadensis HOM05D003365 ORTHO05D000452 1.3e-13 80.9 120 40.0
PSO017G5557 Papaver somniferum HOM05D003365 ORTHO05D003899 1.8e-13 80.5 118 36.4
TPR.G5612 Trifolium pratense HOM05D003365 ORTHO05D003899 1.8e-13 80.5 87 42.5
Thhalv10002569m.g Eutrema salsugineum HOM05D003365 ORTHO05D003899 2.3e-13 80.1 107 42.1
Thhalv10002593m.g Eutrema salsugineum HOM05D003365 ORTHO05D003899 2.3e-13 80.1 130 40.0
CDE01G0789 Ceratophyllum demersum HOM05D003365 ORTHO05D003899 3.0e-13 79.7 63 49.2
Psat0s1248g0040 Pisum sativum HOM05D003365 ORTHO05D003899 3.0e-13 79.7 132 36.4
Ah.08g214240 Amaranthus hybridus HOM05D000836 ORTHO05D000709 3.9e-13 79.3 83 45.8
AUR62031803 Chenopodium quinoa HOM05D003365 ORTHO05D003899 3.9e-13 79.3 118 41.5
Lsat_1_v5_gn_5_179340 Lactuca sativa HOM05D003365 ORTHO05D003899 3.9e-13 79.3 117 37.6
Manes.12G045750 Manihot esculenta HOM05D003365 ORTHO05D003899 3.9e-13 79.3 152 36.2
vmacro14754 Vaccinium macrocarpon HOM05D003365 ORTHO05D003899 3.9e-13 79.3 85 44.7
BcaC01g03254 Brassica carinata HOM05D003365 ORTHO05D003899 5.1e-13 79.0 107 41.1
C03p54290 Brassica napus HOM05D003365 ORTHO05D003899 5.1e-13 79.0 107 41.1
THA.LOC104808785 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 5.1e-13 79.0 126 38.9
DCAR_018569 Daucus carota HOM05D003365 ORTHO05D003899 6.7e-13 78.6 115 40.9
Ca_07518_v3 Cicer arietinum L. HOM05D003365 ORTHO05D003899 1.1e-12 77.8 79 45.6
Ca_30737_v3 Cicer arietinum L. HOM05D003365 ORTHO05D003899 1.1e-12 77.8 79 45.6
CARHR101150 Cardamine hirsuta HOM05D003365 ORTHO05D003899 1.5e-12 77.4 109 43.1
HanXRQChr15g0468271 Helianthus annuus HOM05D003365 ORTHO05D003899 1.5e-12 77.4 124 35.5
THA.LOC104804607 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 1.5e-12 77.4 115 40.9
Nn1g07847 Nelumbo nucifera HOM05D003365 ORTHO05D003899 1.9e-12 77.0 93 40.9
Sp3g22540 Schrenkiella parvula HOM05D003365 ORTHO05D003899 1.9e-12 77.0 149 38.3
SpUn0027_0020 Schrenkiella parvula HOM05D003365 ORTHO05D003899 1.9e-12 77.0 149 38.3
TPR.G5559 Trifolium pratense HOM05D003365 ORTHO05D003899 1.9e-12 77.0 87 41.4
Gohir.A11G137500 Gossypium hirsutum HOM05D003365 ORTHO05D003899 4.3e-12 75.9 118 37.3
ECA247G2566 Erigeron canadensis HOM05D003365 ORTHO05D003899 5.6e-12 75.5 129 34.9
Sc05g0002210 Simmondsia chinensis HOM05D003365 ORTHO05D003899 5.6e-12 75.5 119 35.3
Os02g0621500 Oryza sativa ssp. japonica HOM05D003365 ORTHO05D003899 7.4e-12 75.1 129 35.7
Aa31sc154G60 Aethionema arabicum HOM05D003365 ORTHO05D003899 1.3e-11 74.3 108 41.7
FAN12G0224 Fragaria x ananassa HOM05D003365 ORTHO05D003899 1.3e-11 74.3 163 30.7
BraA03t13524Z Brassica rapa HOM05D003365 ORTHO05D003899 1.6e-11 73.9 138 35.5
Aqoxy2G03887 Aquilegia oxysepala HOM05D003365 ORTHO05D003899 2.1e-11 73.6 102 37.3
AL3G40570 Arabidopsis lyrata HOM05D003365 ORTHO05D003899 2.1e-11 73.6 162 35.2
AT3G24800 Arabidopsis thaliana HOM05D003365 ORTHO05D003899 2.1e-11 73.6 143 32.9
C07p11180 Brassica napus HOM05D003365 ORTHO05D003899 2.1e-11 73.6 112 38.4
CAN.G1632.3 Capsicum annuum HOM05D003365 ORTHO05D003899 2.1e-11 73.6 39 92.3
ClCG09G009060 Citrullus lanatus HOM05D003365 ORTHO05D003899 2.1e-11 73.6 104 38.5
BcaC06g35760 Brassica carinata HOM05D003365 ORTHO05D003899 2.8e-11 73.2 115 37.4
A03p43940 Brassica napus HOM05D003365 ORTHO05D003899 3.6e-11 72.8 141 34.8
Gorai.007G154100 Gossypium raimondii HOM05D003365 ORTHO05D003899 3.6e-11 72.8 138 36.2
A07p07410 Brassica napus HOM05D003365 ORTHO05D003899 4.8e-11 72.4 112 38.4
BraA07t28528Z Brassica rapa HOM05D003365 ORTHO05D003899 4.8e-11 72.4 111 39.6
HPP92_012644 Vanilla planifolia HOM05D003365 ORTHO05D003899 4.8e-11 72.4 131 33.6
BcaB06g26698 Brassica carinata HOM05D003365 ORTHO05D003899 6.2e-11 72.0 112 39.3
BolC7t41590H Brassica oleracea HOM05D003365 ORTHO05D003899 6.2e-11 72.0 108 38.9
Cc01_g17080 Coffea canephora HOM05D003365 ORTHO05D003899 6.2e-11 72.0 76 38.2
SGA_v2.0_scaffold1G00747 Striga asiatica HOM05D003365 ORTHO05D003899 6.2e-11 72.0 97 38.1
Pp3c2_17040 Physcomitrium patens HOM05D003365 ORTHO05D003899 8.1e-11 71.6 115 34.8
Hund05541 Selenicereus undatus HOM05D003365 ORTHO05D003899 8.1e-11 71.6 126 32.5
Hund05542 Selenicereus undatus HOM05D003365 ORTHO05D003899 8.1e-11 71.6 126 32.5
Pp3c1_21360 Physcomitrium patens HOM05D003365 ORTHO05D003899 1.1e-10 71.2 113 38.9
EL10Ac7g17831 Beta vulgaris HOM05D003365 ORTHO05D003899 1.4e-10 70.9 142 36.6
MELO3C021013.2 Cucumis melo HOM05D003365 ORTHO05D003899 1.8e-10 70.5 150 34.7
Gohir.D11G143900 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.8e-10 70.5 138 35.5
Sed0009580 Sechium edule HOM05D003365 ORTHO05D003899 2.4e-10 70.1 79 41.8
Migut.D00534 Erythranthe guttata HOM05D003365 ORTHO05D003899 6.9e-10 68.6 97 36.1
Nn3g19957 Nelumbo nucifera HOM05D003365 ORTHO05D003899 6.9e-10 68.6 138 33.3
Zm00001eb247460 Zea mays HOM05D003365 ORTHO05D003899 6.9e-10 68.6 102 35.3
Cc01_g17090 Coffea canephora HOM05D003365 ORTHO05D003899 1.2e-09 67.8 70 42.9
Sed0009490 Sechium edule HOM05D003365 ORTHO05D003899 1.2e-09 67.8 129 33.3
CsaV3_7G025900 Cucumis sativus L. HOM05D003365 ORTHO05D003899 4.5e-09 65.9 159 32.1
Pp3c2_34310 Physcomitrium patens HOM05D003365 ORTHO05D003899 2.9e-08 63.2 83 38.6
AagrBONN_evm.TU.Sc2ySwM_368.1757 Anthoceros agrestis HOM05D003365 ORTHO05D003899 4.9e-08 62.4 145 31.0
SEGI_02131 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 6.4e-08 62.0 87 39.1
MSTRG.18389 Avicennia marina HOM05D003365 ORTHO05D003899 8.4e-08 61.6 110 30.0
Actinidia23724 Actinidia chinensis HOM05D003365 ORTHO05D003899 1.9e-07 60.5 91 35.2
SEGI_11490 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 4.2e-07 59.3 87 37.9
SEGI_15541 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 4.2e-07 59.3 86 38.4
Pp3c7_700 Physcomitrium patens HOM05D003365 ORTHO05D003899 9.3e-07 58.2 67 38.8
Hund18375 Selenicereus undatus HOM05D003365 ORTHO05D003899 1.2e-06 57.8 83 34.9
CAN.G56.17 Capsicum annuum HOM05D007636 ORTHO05D012343 4.6e-06 55.8 59 76.3
Aa31LG4G13410 Aethionema arabicum HOM05D003365 ORTHO05D003899 7.9e-06 55.1 77 37.7


User provided reference genes

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