Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G852.10 Capsicum annuum HOM05D003112 ORTHO05D043435 6.4e-186 654.1 357 100.0
Nitab4.5_0001221g0040 Nicotiana tabacum HOM05D000654 ORTHO05D002711 3.3e-25 120.2 135 51.1
CAN.G852.8 Capsicum annuum HOM05D003493 ORTHO05D003980 8.2e-24 115.5 175 46.3
PGSC0003DMG400004007 Solanum tuberosum HOM05D000654 ORTHO05D002711 1.5e-22 111.3 136 49.3
Peaxi162Scf00549g00019 Petunia axillaris HOM05D000654 ORTHO05D002711 2.2e-21 107.5 136 45.6
Solyc02g093160.3 Solanum lycopersicum HOM05D000654 ORTHO05D002711 7.1e-20 102.4 136 47.1
Sopen02g037730 Solanum pennellii HOM05D000654 ORTHO05D002711 7.1e-20 102.4 136 47.1
Nitab4.5_0002765g0080 Nicotiana tabacum HOM05D000654 ORTHO05D002711 3.0e-18 97.1 135 45.2
CAN.G791.1 Capsicum annuum HOM05D000654 ORTHO05D043435 6.3e-16 89.4 63 74.6
CAN.G524.11 Capsicum annuum HOM05D003112 ORTHO05D003660 2.5e-12 77.4 44 81.8
Solyc09g090900.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 2.5e-12 77.4 44 81.8
Solyc03g005730.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 7.2e-12 75.9 43 81.4
Sopen03g001740 Solanum pennellii HOM05D003112 ORTHO05D003660 7.2e-12 75.9 43 81.4
Sopen09g033880 Solanum pennellii HOM05D003112 ORTHO05D003660 7.2e-12 75.9 44 79.5
PGSC0003DMG400013459 Solanum tuberosum HOM05D003112 ORTHO05D003660 7.2e-12 75.9 43 81.4
Peaxi162Scf00242g01317 Petunia axillaris HOM05D003112 ORTHO05D003660 9.3e-12 75.5 43 79.1
Peaxi162Scf01044g00224 Petunia axillaris HOM05D003112 ORTHO05D003660 9.3e-12 75.5 44 77.3
CAN.G638.35 Capsicum annuum HOM05D003112 ORTHO05D003660 2.1e-11 74.3 43 79.1
Nitab4.5_0001041g0160 Nicotiana tabacum HOM05D003112 ORTHO05D003660 2.7e-11 73.9 44 75.0
Nitab4.5_0001041g0170 Nicotiana tabacum HOM05D003112 ORTHO05D003660 2.7e-11 73.9 44 75.0
Nitab4.5_0000592g0470 Nicotiana tabacum HOM05D003112 ORTHO05D003660 6.1e-11 72.8 43 76.7
Nitab4.5_0002210g0050 Nicotiana tabacum HOM05D003112 ORTHO05D003660 6.1e-11 72.8 43 76.7
PSO764G0258 Papaver somniferum HOM05D003112 ORTHO05D003660 6.1e-11 72.8 73 47.9
PSO832G1505 Papaver somniferum HOM05D003112 ORTHO05D003660 6.1e-11 72.8 73 47.9
Peaxi162Scf01044g00008 Petunia axillaris HOM05D003112 ORTHO05D003660 6.1e-11 72.8 44 75.0
Peaxi162Scf45037g00004 Petunia axillaris HOM05D003112 ORTHO05D003660 6.1e-11 72.8 44 75.0
MSTRG.24656 Avicennia marina HOM05D003112 ORTHO05D003660 7.9e-11 72.4 44 72.7
CSS0008180 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 1.8e-10 71.2 43 76.7
Medtr1g073200 Medicago truncatula HOM05D003112 ORTHO05D003660 1.8e-10 71.2 69 50.7
Cc03_g06410 Coffea canephora HOM05D003112 ORTHO05D003660 2.3e-10 70.9 43 74.4
Lj6g0010145 Lotus japonicus HOM05D003112 ORTHO05D003660 2.3e-10 70.9 43 74.4
Oeu061871.1 Olea europaea HOM05D003112 ORTHO05D003660 2.3e-10 70.9 43 74.4
unitig_736.g22485 Utricularia gibba HOM05D003112 ORTHO05D003660 3.9e-10 70.1 43 72.1
Cpa.g.sc59.7 Carica papaya HOM05D003112 ORTHO05D003660 5.1e-10 69.7 73 47.9
CDE09G0390 Ceratophyllum demersum HOM05D003112 ORTHO05D003660 5.1e-10 69.7 43 69.8
HanXRQChr01g0023041 Helianthus annuus HOM05D003112 ORTHO05D003660 5.1e-10 69.7 43 69.8
Nitab4.5_0005154g0020 Nicotiana tabacum HOM05D003112 ORTHO05D003660 5.1e-10 69.7 44 72.7
QL06p021218 Quercus lobata HOM05D003112 ORTHO05D003660 5.1e-10 69.7 43 74.4
SalBow3G1186 Salvia bowleyana HOM05D003112 ORTHO05D003660 5.1e-10 69.7 44 70.5
SalBow3G3468 Salvia bowleyana HOM05D003112 ORTHO05D003660 5.1e-10 69.7 44 70.5
TAR633G1760 Trochodendron aralioides HOM05D003112 ORTHO05D003660 5.1e-10 69.7 43 74.4
CSS0035703 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 72.1
CiPaw.02G106400 Carya illinoinensis HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 72.1
Glyma.14G217300 Glycine max HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 72.1
Glyma.17G256102 Glycine max HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 72.1
Rhsim04G0171200 Rhododendron simsii HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 72.1
Rhsim07G0000200 Rhododendron simsii HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 72.1
SalBow2G1480 Salvia bowleyana HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 72.1
Sc19g0005580 Simmondsia chinensis HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 72.1
VMungo0720G0086 Vigna mungo HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 72.1
GSVIVG01027922001 Vitis vinifera HOM05D003112 ORTHO05D003660 6.7e-10 69.3 43 74.4
arahy.Tifrunner.gnm1.ann1.L114HI Arachis hypogaea HOM05D003112 ORTHO05D003660 8.8e-10 68.9 43 72.1
arahy.Tifrunner.gnm1.ann1.RMYF3V Arachis hypogaea HOM05D003112 ORTHO05D003660 8.8e-10 68.9 43 72.1
Cfa014790 Carpinus fangiana HOM05D003112 ORTHO05D003660 8.8e-10 68.9 43 72.1
Haze_11466 Corylus avellana HOM05D003112 ORTHO05D003660 8.8e-10 68.9 43 72.1
Dinv27120 Davidia involucrata HOM05D003112 ORTHO05D003660 8.8e-10 68.9 43 72.1
Dinv29798 Davidia involucrata HOM05D003112 ORTHO05D003660 8.8e-10 68.9 43 72.1
ECA248G1257 Erigeron canadensis HOM05D003112 ORTHO05D003660 1.1e-09 68.6 43 69.8
Lj3A640T23 Lonicera japonica HOM05D003112 ORTHO05D003660 1.1e-09 68.6 43 69.8
Lj5g0009083 Lotus japonicus HOM05D003112 ORTHO05D003660 1.1e-09 68.6 43 67.4
Zm00001eb208610 Zea mays HOM05D003112 ORTHO05D003660 1.1e-09 68.6 43 72.1
Zm00001eb208760 Zea mays HOM05D003112 ORTHO05D003660 1.1e-09 68.6 43 72.1
DCAR_024295 Daucus carota HOM05D003112 ORTHO05D003660 1.5e-09 68.2 43 74.4
Eucgr.H02913 Eucalyptus grandis HOM05D003112 ORTHO05D003660 1.5e-09 68.2 44 65.9
Hma1.2p1_0112F.1_g054810 Hydrangea macrophylla HOM05D003112 ORTHO05D003660 1.5e-09 68.2 43 69.8
Manes.03G158200 Manihot esculenta HOM05D003112 ORTHO05D003660 1.5e-09 68.2 43 74.4
Sabra08G0131800 Salix brachista HOM05D003112 ORTHO05D003660 1.5e-09 68.2 43 72.1
TWI09G1061 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 1.5e-09 68.2 43 72.1
Zm00001eb230780 Zea mays HOM05D003112 ORTHO05D003660 1.5e-09 68.2 43 69.8
Atru.chr4.1904 Acer truncatum HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 69.8
ATR0787G024 Amborella trichopoda HOM05D003112 ORTHO05D003660 1.9e-09 67.8 54 55.6
Aqoxy5G00139 Aquilegia oxysepala HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 69.8
DCAR_027353 Daucus carota HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 72.1
FAN12G3900 Fragaria x ananassa HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 69.8
FAN17G0040 Fragaria x ananassa HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 69.8
FAN22G1113 Fragaria x ananassa HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 69.8
Manes.15G046300 Manihot esculenta HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 69.8
Nn3g19795 Nelumbo nucifera HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 69.8
Potri.010G065100 Populus trichocarpa HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 69.8
Sabra10G0042000 Salix brachista HOM05D003112 ORTHO05D003660 1.9e-09 67.8 43 69.8
Actinidia14607 Actinidia chinensis HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
EL10Ac3g06677 Beta vulgaris HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
CANSAT78G1988 Cannabis sativa HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 67.4
Cfa014789 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 72.1
ClCG09G012580 Citrullus lanatus HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
COL.COLO4_15976 Corchorus olitorius HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Dinv19267 Davidia involucrata HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Duzib151G0757 Durio zibethinus HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Migut.G00571 Erythranthe guttata HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 67.4
FvH4_4g04720 Fragaria vesca HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 67.4
Gohir.A09G059800 Gossypium hirsutum HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Gohir.A09G227100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Gohir.D09G059100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Gohir.D09G228100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Gorai.006G073400 Gossypium raimondii HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Gorai.006G250800 Gossypium raimondii HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Manes.03G158100 Manihot esculenta HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Os02g0125100 Oryza sativa ssp. japonica HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
Prupe.1G049300 Prunus persica HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 67.4
RcHm_v2.0_Chr4g0395531 Rosa chinensis HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 67.4
Thecc.04G265900 Theobroma cacao HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
GSVIVG01029978001 Vitis vinifera HOM05D003112 ORTHO05D003660 2.5e-09 67.4 43 69.8
ATR0787G215 Amborella trichopoda HOM05D003112 ORTHO05D003660 3.3e-09 67.0 54 53.7
CsaV3_3G049730 Cucumis sativus L. HOM05D003112 ORTHO05D003660 3.3e-09 67.0 43 67.4
ECA248G0532 Erigeron canadensis HOM05D003112 ORTHO05D003660 3.3e-09 67.0 43 67.4
Lsat_1_v5_gn_1_75540 Lactuca sativa HOM05D003112 ORTHO05D003660 3.3e-09 67.0 43 67.4
Lsat_1_v5_gn_2_41240 Lactuca sativa HOM05D003112 ORTHO05D003660 3.3e-09 67.0 43 67.4
Lj3C639T4 Lonicera japonica HOM05D003112 ORTHO05D003660 3.3e-09 67.0 73 42.5
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 3.3e-09 67.0 43 69.8
Phvul.007G232000 Phaseolus vulgaris HOM05D003112 ORTHO05D003660 3.3e-09 67.0 43 67.4
Psat6g107560 Pisum sativum HOM05D003112 ORTHO05D003660 3.3e-09 67.0 43 72.1
Atru.chr4.1907 Acer truncatum HOM05D003112 ORTHO05D003660 4.3e-09 66.6 43 67.4
COL.COLO4_15975 Corchorus olitorius HOM05D003112 ORTHO05D003660 4.3e-09 66.6 43 69.8
Glyma.20G199600 Glycine max HOM05D003112 ORTHO05D003660 4.3e-09 66.6 43 67.4
Lj3A639T17 Lonicera japonica HOM05D003112 ORTHO05D003660 4.3e-09 66.6 43 65.1
RcHm_v2.0_Chr4g0395521 Rosa chinensis HOM05D003112 ORTHO05D003660 4.3e-09 66.6 43 67.4
Sed0016595 Sechium edule HOM05D003112 ORTHO05D003660 4.3e-09 66.6 43 69.8
HPP92_026397 Vanilla planifolia HOM05D003112 ORTHO05D003660 4.3e-09 66.6 43 67.4
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 4.3e-09 66.6 54 57.4
CBR_g53549 Chara braunii HOM05D003112 ORTHO05D003660 5.7e-09 66.2 43 62.8
Potri.008G172500 Populus trichocarpa HOM05D003112 ORTHO05D003660 5.7e-09 66.2 43 69.8
TPR.G18564 Trifolium pratense HOM05D003112 ORTHO05D003660 5.7e-09 66.2 73 43.8
arahy.Tifrunner.gnm1.ann1.F7U1GP Arachis hypogaea HOM05D003112 ORTHO05D003660 7.4e-09 65.9 43 67.4
arahy.Tifrunner.gnm1.ann1.K9LPZT Arachis hypogaea HOM05D003112 ORTHO05D003660 7.4e-09 65.9 43 67.4
HanXRQChr14g0434761 Helianthus annuus HOM05D003112 ORTHO05D003660 7.4e-09 65.9 43 65.1
Lalb_Chr11g0067221 Lupinus albus HOM05D003112 ORTHO05D003660 7.4e-09 65.9 43 65.1
MD13G1222900 Malus domestica HOM05D003112 ORTHO05D003660 7.4e-09 65.9 43 65.1
MD16G1227200 Malus domestica HOM05D003112 ORTHO05D003660 7.4e-09 65.9 43 65.1
PGR004G0234 Punica granatum HOM05D003112 ORTHO05D003660 7.4e-09 65.9 43 67.4
TWI73G0266 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 7.4e-09 65.9 43 67.4
HanXRQChr14g0434771 Helianthus annuus HOM05D003112 ORTHO05D003660 9.7e-09 65.5 43 62.8
TPR.G23961 Trifolium pratense HOM05D003112 ORTHO05D003660 9.7e-09 65.5 43 69.8
CiPaw.01G177200 Carya illinoinensis HOM05D003112 ORTHO05D003660 1.3e-08 65.1 43 69.8
Ca_11883_v3 Cicer arietinum L. HOM05D003112 ORTHO05D003660 1.3e-08 65.1 43 69.8
Ciclev10004776m.g Citrus clementina HOM05D003112 ORTHO05D003660 1.3e-08 65.1 43 67.4
Lalb_Chr23g0271781 Lupinus albus HOM05D003112 ORTHO05D003660 1.3e-08 65.1 43 62.8
Medtr1g045750 Medicago truncatula HOM05D003112 ORTHO05D003660 1.3e-08 65.1 43 69.8
SHI00769 Sapria himalayana HOM05D003112 ORTHO05D003660 1.3e-08 65.1 44 63.6
Ah.04g163950 Amaranthus hybridus HOM05D003112 ORTHO05D003660 1.7e-08 64.7 73 43.8
Carub.0007s2912 Capsella rubella HOM05D003112 ORTHO05D003660 1.7e-08 64.7 43 65.1
Duzib151G1146 Durio zibethinus HOM05D003112 ORTHO05D003660 1.7e-08 64.7 43 67.4
Gorai.006G073300 Gossypium raimondii HOM05D003112 ORTHO05D003660 1.7e-08 64.7 43 69.8
Psat3g068240 Pisum sativum HOM05D003112 ORTHO05D003660 1.7e-08 64.7 43 69.8
Sp7g10990 Schrenkiella parvula HOM05D003112 ORTHO05D003660 1.7e-08 64.7 43 65.1
Hund24873 Selenicereus undatus HOM05D003112 ORTHO05D003660 1.7e-08 64.7 43 67.4
BcaB04g17692 Brassica carinata HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
BcaC02g09423 Brassica carinata HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
BcaC07g37364 Brassica carinata HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
A04p08700 Brassica napus HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
A08p06810 Brassica napus HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
C04p42460 Brassica napus HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
C08p08140 Brassica napus HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
BolC4t25824H Brassica oleracea HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
BolC8t47666H Brassica oleracea HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
BraA04t16563Z Brassica rapa HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
BraA08t32699Z Brassica rapa HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
MELO3C003344.2 Cucumis melo HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
Thhalv10024960m.g Eutrema salsugineum HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 65.1
Gohir.A09G059700 Gossypium hirsutum HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 67.4
Gohir.D09G059000 Gossypium hirsutum HOM05D003112 ORTHO05D003660 2.2e-08 64.3 43 67.4
AagrBONN_evm.TU.Sc2ySwM_368.2484 Anthoceros agrestis HOM05D003112 ORTHO05D003660 2.8e-08 63.9 43 62.8
AUR62019663 Chenopodium quinoa HOM05D003112 ORTHO05D003660 2.8e-08 63.9 43 65.1
THA.LOC104821631 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 2.8e-08 63.9 43 67.4
Thecc.04G265800 Theobroma cacao HOM05D003112 ORTHO05D003660 4.8e-08 63.2 43 65.1
Pp3c4_11270 Physcomitrium patens HOM05D003112 ORTHO05D003660 6.3e-08 62.8 43 62.8
SEGI_32008 Sequoiadendron giganteum HOM05D003112 ORTHO05D003660 8.2e-08 62.4 43 62.8
Mapoly0081s0061 Marchantia polymorpha HOM05D003112 ORTHO05D003660 1.1e-07 62.0 73 39.7
THA.LOC104808742 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 1.1e-07 62.0 43 65.1
CARHR219070 Cardamine hirsuta HOM05D003112 ORTHO05D003660 1.4e-07 61.6 43 65.1
AUR62013948 Chenopodium quinoa HOM05D003112 ORTHO05D003660 1.4e-07 61.6 43 65.1
Aa31LG7G1680 Aethionema arabicum HOM05D003112 ORTHO05D003660 1.8e-07 61.2 43 62.8
AL9U10130 Arabidopsis lyrata HOM05D003112 ORTHO05D003660 1.8e-07 61.2 43 62.8
AT4G13430 Arabidopsis thaliana HOM05D003112 ORTHO05D003660 1.8e-07 61.2 43 62.8
CDE02G3734 Ceratophyllum demersum HOM05D003112 ORTHO05D003660 1.8e-07 61.2 45 62.2
Cre01.g004500 Chlamydomonas reinhardtii HOM05D003112 ORTHO05D003660 5.3e-07 59.7 54 44.4
Cc07_g06180 Coffea canephora HOM05D000654 ORTHO05D002711 9.1e-07 58.9 94 41.5
CiPaw.01G098800 Carya illinoinensis HOM05D003112 ORTHO05D003660 1.5e-06 58.2 34 79.4
CAN.G14.48 Capsicum annuum HOM05D003493 ORTHO05D003980 2.0e-06 57.8 64 56.2
Nn1g02981 Nelumbo nucifera HOM05D003112 ORTHO05D003660 2.6e-06 57.4 45 60.0
vmacro08559 Vaccinium macrocarpon HOM05D003112 ORTHO05D003660 2.6e-06 57.4 86 38.4
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 7.7e-06 55.8 42 66.7


User provided reference genes

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