Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1294.6 626 100.0
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1220.7 646 91.8
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1219.9 646 91.8
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1218.4 646 92.3
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1217.6 646 92.1
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1217.6 646 92.1
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 648 90.4
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 648 90.3
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 648 83.8
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1130.2 646 84.4
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1127.5 646 83.4
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1124.8 644 83.9
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1122.8 649 83.5
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1122.8 647 83.6
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1122.1 646 84.2
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1119.0 647 83.3
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1117.1 645 82.5
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1115.9 646 83.3
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1114.8 645 82.6
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1113.2 647 83.0
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1112.4 646 83.0
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1110.5 649 82.6
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1109.4 642 81.6
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1108.2 647 82.7
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1108.2 645 82.3
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1107.0 649 82.1
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1106.3 647 82.2
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1106.3 649 82.0
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1106.3 646 82.7
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1105.5 646 82.5
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1104.7 645 81.2
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1104.7 645 81.9
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1104.7 645 81.6
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1104.4 647 83.0
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1104.0 649 82.3
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1102.8 646 81.6
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1102.4 644 81.2
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1102.4 644 81.2
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1102.4 649 81.5
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1102.0 649 82.0
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1102.0 644 81.2
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1102.0 645 82.9
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1100.5 648 82.1
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1098.2 650 80.9
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1097.8 646 80.7
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1097.4 644 81.5
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1097.4 647 81.3
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1095.9 645 80.6
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1095.9 646 82.4
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1095.1 645 82.0
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1094.3 646 81.7
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1093.6 646 82.5
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1093.6 645 80.8
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1093.6 643 82.1
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1093.2 648 81.3
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1092.0 647 80.7
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1092.0 715 76.1
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1091.6 646 81.7
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1090.9 645 81.6
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1090.5 645 81.1
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1090.5 646 81.4
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1089.3 640 83.0
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1088.6 647 82.7
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1088.6 644 82.0
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1088.2 645 80.5
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1086.6 646 81.3
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1086.6 643 81.2
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1085.9 645 80.5
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1085.9 642 80.5
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1085.1 644 82.1
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1085.1 643 82.0
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1085.1 646 80.2
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1084.3 646 81.7
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1083.9 648 80.2
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1083.9 645 79.8
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1083.2 647 80.5
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1082.4 647 81.9
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1082.4 646 81.3
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1082.0 642 80.8
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1079.3 646 81.6
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1078.2 646 79.7
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1077.8 643 80.2
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1075.8 646 79.9
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1075.5 647 81.0
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1075.5 647 81.0
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1075.1 646 81.0
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 2.1e-311 1071.6 647 80.8
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 6.4e-311 1070.1 647 80.7
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 2.5e-310 1068.1 647 80.4
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 3.3e-310 1067.8 595 85.9
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 4.2e-310 1067.4 618 83.3
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 9.4e-310 1066.2 602 85.0
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 1.2e-309 1065.8 646 79.1
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 1.6e-309 1065.4 651 80.0
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 4.7e-309 1063.9 645 80.0
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 4.0e-308 1060.8 645 79.2
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 2.6e-307 1058.1 645 78.6
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 4.1e-305 1050.8 649 78.4
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 1.6e-304 1048.9 568 88.2
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 3.6e-301 1037.7 585 84.6
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 1.8e-300 1035.4 641 77.5
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 4.9e-298 1027.3 624 78.2
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 1.8e-297 1025.4 623 79.3
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 2.9e-295 1018.1 642 77.1
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 8.6e-287 989.9 583 82.3
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 1.5e-286 989.2 673 73.0
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 4.9e-282 974.2 591 79.4
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 8.3e-282 973.4 582 80.9
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 1.6e-277 959.1 590 78.8
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 6.8e-276 953.7 539 82.9
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 5.6e-270 934.1 569 78.4
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.5e-267 926.0 554 79.2
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 6.0e-264 914.1 612 72.7
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 6.0e-232 807.7 474 81.6
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 1.1e-214 750.4 501 72.9
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 5.3e-196 688.3 424 79.5
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 2.7e-195 686.0 394 83.8
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 6.1e-176 621.7 581 55.6
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 3.0e-146 523.1 267 92.1
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.7e-125 454.1 535 49.0
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.1e-68 265.4 125 94.4
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 1.8e-55 221.5 203 57.6
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 8.9e-42 176.0 164 56.1
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 2.0e-25 121.7 101 60.4
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 2.6e-25 121.3 150 50.0
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 9.3e-23 112.8 92 60.9
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 6.2e-19 100.1 53 88.7
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 6.9e-18 96.7 53 86.8
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 3.8e-08 64.3 32 90.6


User provided reference genes

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