Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 6.2e-221 770.4 366 100.0
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 4.3e-145 518.5 355 73.8
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 4.7e-144 515.0 348 73.3
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.3e-143 512.7 366 70.5
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.2e-139 500.4 366 66.9
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 2.1e-139 499.6 357 68.6
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 6.0e-139 498.0 366 68.0
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 6.0e-139 498.0 367 67.3
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 1.1e-137 493.8 367 66.5
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.5e-137 493.4 372 65.6
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 2.5e-137 492.7 366 67.2
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 1.7e-133 479.9 346 69.4
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 6.4e-133 478.0 362 64.4
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 2.4e-132 476.1 361 64.3
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 5.4e-132 474.9 362 65.2
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 5.4e-132 474.9 362 65.2
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 1.2e-131 473.8 361 63.7
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 1.2e-131 473.8 361 64.0
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 3.5e-131 472.2 344 69.2
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 1.5e-129 466.8 360 64.2
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.9e-129 466.5 363 63.4
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 3.3e-129 465.7 362 63.3
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 5.6e-129 464.9 359 64.3
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 9.6e-129 464.2 360 63.3
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 9.6e-129 464.2 360 63.3
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 2.8e-128 462.6 360 64.2
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 6.2e-128 461.5 362 61.6
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.8e-127 459.9 362 63.8
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 4.0e-127 458.8 361 63.2
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 5.3e-127 458.4 365 61.4
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.0e-126 456.4 359 62.1
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 2.0e-126 456.4 369 62.6
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 2.6e-126 456.1 359 62.1
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 4.4e-126 455.3 362 61.0
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 5.8e-126 454.9 361 61.2
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 1.3e-125 453.8 363 62.3
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 1.7e-125 453.4 362 61.0
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 2.2e-125 453.0 361 62.3
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 4.9e-125 451.8 362 63.5
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 1.1e-124 450.7 359 61.8
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 1.4e-124 450.3 362 61.6
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 1.9e-124 449.9 364 61.3
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 4.2e-124 448.7 364 61.5
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 4.2e-124 448.7 366 63.7
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 5.4e-124 448.4 367 61.6
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 7.1e-124 448.0 363 62.5
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.2e-123 447.2 361 61.2
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 2.1e-123 446.4 361 60.9
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 4.6e-123 445.3 361 60.9
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 4.6e-123 445.3 361 61.5
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 4.6e-123 445.3 361 61.2
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 6.0e-123 444.9 362 59.7
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 7.9e-123 444.5 363 61.2
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 7.9e-123 444.5 363 61.4
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 1.3e-122 443.7 362 61.0
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.3e-122 443.7 367 61.3
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 1.7e-122 443.4 366 62.0
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 3.9e-122 442.2 369 60.4
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 6.6e-122 441.4 362 59.4
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 6.6e-122 441.4 366 59.8
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 1.5e-121 440.3 361 60.7
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.5e-121 439.5 356 61.2
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 3.3e-121 439.1 366 60.7
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 5.6e-121 438.3 360 60.8
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 5.6e-121 438.3 367 61.0
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 9.6e-121 437.6 392 57.4
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 9.6e-121 437.6 370 59.2
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 2.1e-120 436.4 360 59.4
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 2.1e-120 436.4 355 61.7
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 2.8e-120 436.0 359 58.5
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.8e-120 436.0 356 61.0
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 6.2e-120 434.9 360 61.7
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 8.1e-120 434.5 362 59.7
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 1.4e-119 433.7 354 59.6
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 1.8e-119 433.3 363 59.8
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 1.8e-119 433.3 368 59.2
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 2.4e-119 433.0 354 60.2
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 2.4e-119 433.0 360 60.0
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 3.1e-119 432.6 363 59.5
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 9.0e-119 431.0 374 60.4
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 9.0e-119 431.0 363 57.9
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 1.2e-118 430.6 364 59.6
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 1.3e-117 427.2 365 59.2
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.7e-117 426.8 360 58.3
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 3.8e-117 425.6 359 57.7
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.1e-116 424.1 351 59.5
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 1.1e-116 424.1 360 58.6
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 1.4e-116 423.7 356 60.1
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 1.9e-116 423.3 357 59.9
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 7.1e-116 421.4 357 58.5
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 7.1e-116 421.4 357 58.5
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 9.3e-116 421.0 355 59.2
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.6e-115 420.2 358 58.9
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.6e-115 420.2 358 58.7
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 2.1e-115 419.9 367 58.0
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 2.1e-115 419.9 361 59.0
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 2.7e-115 419.5 363 60.3
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.0e-114 417.5 356 59.0
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.8e-114 416.8 357 59.9
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 1.8e-114 416.8 358 58.4
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 1.8e-114 416.8 362 57.7
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.3e-114 416.4 358 57.5
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 3.0e-114 416.0 356 59.0
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 5.1e-114 415.2 363 59.2
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.9e-113 413.3 358 58.4
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 2.5e-113 412.9 325 62.5
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 3.3e-113 412.5 356 57.9
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 5.6e-113 411.8 363 58.7
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 7.4e-113 411.4 352 56.8
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 7.4e-113 411.4 339 60.5
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 9.6e-113 411.0 367 58.6
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 3.7e-112 409.1 353 56.7
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 3.7e-112 409.1 355 59.2
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 4.8e-112 408.7 360 58.1
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 8.1e-112 407.9 360 58.6
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 1.4e-111 407.1 364 57.4
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 1.8e-111 406.8 364 56.6
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 1.8e-111 406.8 370 55.9
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 3.1e-111 406.0 353 58.4
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 5.3e-111 405.2 363 57.9
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 5.3e-111 405.2 402 52.2
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 1.2e-110 404.1 352 58.2
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 7.6e-110 401.4 364 56.9
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 1.7e-109 400.2 354 57.6
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 9.3e-108 394.4 360 56.1
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 1.2e-107 394.0 369 58.0
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 3.5e-107 392.5 356 56.7
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 7.9e-107 391.3 358 56.1
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 8.7e-106 387.9 325 59.4
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.1e-105 387.5 354 57.6
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 1.3e-104 384.0 367 55.9
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 1.3e-104 384.0 367 55.9
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 6.3e-104 381.7 364 55.5
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 9.0e-103 377.9 364 56.0
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.3e-101 374.0 363 57.6
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 2.2e-101 373.2 289 63.0
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 7.2e-100 368.2 361 50.7
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 9.3e-100 367.9 357 52.1
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 9.3e-100 367.9 387 51.9
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 1.3e-98 364.0 362 53.3
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 2.5e-97 359.8 360 52.8
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 4.8e-96 355.5 284 61.6
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 2.6e-94 349.7 349 53.9
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 5.0e-93 345.5 361 53.2
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 1.3e-85 320.9 312 53.2
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 3.0e-82 309.7 364 45.1
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 2.6e-81 306.6 348 50.6
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 2.6e-81 306.6 335 51.6
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 2.6e-81 306.6 335 51.6
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 7.2e-76 288.5 329 48.9
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.8e-74 283.9 368 42.1
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 2.0e-73 280.4 365 43.3
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 3.8e-69 266.2 310 48.4
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 4.2e-68 262.7 315 46.3
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.4e-63 247.7 331 43.8
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 1.3e-61 241.1 413 35.4
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 2.8e-59 233.4 256 48.8
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 2.8e-56 223.4 351 37.6
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 8.3e-56 221.9 242 49.2
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 5.8e-41 172.6 185 44.9
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 2.5e-36 157.1 105 71.4
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 1.3e-32 144.8 216 43.1
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 6.6e-29 132.5 313 30.0
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 8.6e-29 132.1 358 28.8
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 1.5e-28 131.3 228 38.6
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 1.2e-27 128.3 228 39.5
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 7.6e-25 119.0 97 67.0
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 2.9e-24 117.1 131 49.6
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 3.8e-24 116.7 429 25.4
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 4.9e-24 116.3 107 56.1
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 4.9e-24 116.3 107 56.1
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-23 115.2 107 55.1
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 2.8e-19 100.5 56 76.8
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 1.1e-18 98.6 147 40.1
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.4e-18 98.2 63 65.1
Actinidia14145 Actinidia chinensis HOM05D003678 ORTHO05D004340 4.9e-16 89.7 77 59.7
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 4.9e-16 89.7 130 43.8
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 1.9e-12 77.8 47 72.3
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 3.3e-12 77.0 91 49.5
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 4.3e-12 76.6 83 53.0
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 2.8e-11 73.9 48 66.7
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.0e-09 67.8 89 40.4
BcaC08g45872 Brassica carinata HOM05D005572 ORTHO05D032868 9.9e-09 65.5 31 93.5
C05p46930 Brassica napus HOM05D003678 ORTHO05D016118 3.2e-07 60.5 36 72.2
BolC5t33423H Brassica oleracea HOM05D003678 ORTHO05D016118 3.2e-07 60.5 36 72.2
Cfa024431 Carpinus fangiana HOM05D003678 ORTHO05D124744 3.2e-07 60.5 177 29.4
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 6.0e-06 56.2 51 41.2


User provided reference genes

Program Settings