Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 4.6e-132 474.6 238 100.0
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 4.2e-117 424.9 231 90.0
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.2e-116 423.3 231 90.5
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.3e-115 419.9 238 87.8
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.3e-114 415.2 238 87.0
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 5.7e-114 414.5 241 86.7
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 6.9e-104 380.9 233 79.4
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 5.9e-103 377.9 239 75.7
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.4e-101 373.2 241 75.5
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.5e-101 372.5 238 76.5
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 4.2e-101 371.7 241 73.9
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.2e-100 370.2 241 74.3
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 4.7e-100 368.2 233 75.1
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.8e-99 366.3 241 73.4
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.9e-99 365.2 229 76.4
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 8.8e-99 364.0 241 72.6
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.1e-98 363.6 241 73.9
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.1e-98 363.6 233 75.1
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.3e-98 362.1 241 78.8
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 5.7e-98 361.3 238 73.5
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 7.4e-98 360.9 231 75.8
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 9.7e-98 360.5 231 74.5
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 9.7e-98 360.5 231 75.8
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.3e-97 360.1 230 73.9
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.7e-97 359.8 241 73.4
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.8e-97 358.2 223 77.1
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.1e-96 357.1 238 73.5
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.4e-96 356.7 229 73.8
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 5.3e-96 354.8 229 74.7
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 7.0e-96 354.4 231 73.6
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 7.0e-96 354.4 242 70.2
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 9.1e-96 354.0 239 72.8
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.5e-95 353.2 233 73.8
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 2.6e-95 352.4 231 71.9
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 2.6e-95 352.4 233 72.5
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.4e-95 352.1 233 73.4
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 3.4e-95 352.1 232 70.3
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 4.5e-95 351.7 229 73.8
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 7.7e-95 350.9 230 73.0
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 7.7e-95 350.9 231 72.7
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 7.7e-95 350.9 229 73.4
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.3e-94 350.1 233 71.2
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.3e-94 350.1 231 71.4
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 2.9e-94 349.0 233 72.5
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.0e-94 348.2 241 70.1
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 6.5e-94 347.8 231 72.3
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 8.5e-94 347.4 238 69.7
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.1e-93 347.1 233 71.7
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.1e-93 347.1 233 71.7
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.4e-93 346.7 229 69.4
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.9e-93 346.3 241 69.3
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.9e-93 346.3 228 71.9
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.9e-93 346.3 240 70.8
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.9e-93 346.3 240 70.8
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.2e-93 345.1 234 70.9
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 5.5e-93 344.7 252 67.1
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 7.2e-93 344.4 229 71.2
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 9.4e-93 344.0 249 67.1
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.1e-92 342.8 222 74.8
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.1e-92 342.8 234 70.1
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 2.7e-92 342.4 238 69.3
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 3.6e-92 342.0 231 69.7
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 4.7e-92 341.7 239 70.7
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 6.1e-92 341.3 231 70.6
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 6.1e-92 341.3 241 68.5
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 8.0e-92 340.9 230 69.6
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 8.0e-92 340.9 239 70.3
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.4e-91 340.1 229 69.9
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.4e-91 340.1 241 68.9
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.3e-91 339.3 231 71.9
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.3e-91 339.3 231 67.5
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 3.0e-91 339.0 234 68.8
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 3.9e-91 338.6 224 71.4
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 8.8e-91 337.4 264 64.8
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.1e-90 337.0 211 76.8
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.5e-90 336.7 229 69.4
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.6e-90 335.9 230 69.1
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.3e-90 335.5 228 69.7
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.3e-90 335.5 229 69.9
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.2e-89 332.8 275 61.1
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 4.8e-89 331.6 213 76.1
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.1e-88 330.5 240 68.3
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 2.4e-88 329.3 230 68.7
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 2.4e-88 329.3 230 68.7
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 2.4e-88 329.3 230 68.7
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.1e-88 328.9 226 70.4
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 5.3e-88 328.2 238 67.2
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.2e-87 327.0 230 68.3
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.2e-87 327.0 236 69.1
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.6e-87 325.9 266 62.4
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 2.6e-87 325.9 199 78.4
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.5e-87 325.5 230 65.7
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.5e-87 325.1 230 65.7
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 7.7e-87 324.3 230 67.8
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.3e-86 323.6 240 66.7
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 7.2e-85 317.8 212 71.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 7.2e-85 317.8 339 51.0
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 4.7e-84 315.1 202 74.8
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.4e-83 313.5 284 56.0
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.5e-82 310.1 195 74.9
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 7.5e-82 307.8 240 61.2
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 6.3e-81 304.7 241 64.3
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 4.5e-79 298.5 204 71.1
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.6e-76 290.0 204 68.1
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 4.7e-76 288.5 191 71.2
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 8.8e-75 284.3 240 61.2
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.8e-72 276.6 235 59.6
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 5.9e-71 271.6 229 55.9
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.7e-70 270.0 227 57.7
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 4.0e-67 258.8 176 69.9
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.2e-65 253.1 163 71.8
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 3.7e-65 252.3 221 52.9
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.5e-61 239.6 167 68.9
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.3e-61 239.2 150 76.7
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.6e-55 220.3 142 76.8
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.6e-55 220.3 142 76.8
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 6.6e-54 214.9 135 71.9
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.5e-53 213.8 191 55.0
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 7.3e-53 211.5 229 46.7
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.2e-49 199.9 127 78.7
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 4.9e-49 198.7 133 72.2
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.4e-48 197.2 182 56.6
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 3.9e-46 189.1 125 68.0
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.2e-44 184.1 119 76.5
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.8e-44 183.0 132 74.2
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 3.6e-44 182.6 119 75.6
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.6e-44 182.6 121 71.9
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 6.8e-43 178.3 122 71.3
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.0e-42 176.8 161 56.5
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 3.4e-42 176.0 123 66.7
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.0e-38 164.5 235 41.7
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.9e-34 147.9 129 62.0
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-32 144.4 101 74.3
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 7.1e-32 141.7 121 61.2
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 4.6e-31 139.0 85 77.6
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.3e-30 136.7 121 62.8
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 7.3e-29 131.7 159 45.3
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 6.2e-28 128.6 91 71.4
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.3e-25 120.9 69 76.8
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 6.4e-25 118.6 237 33.8
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 2.4e-24 116.7 77 67.5
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.7e-23 113.2 100 65.0
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.5e-21 106.7 79 53.2
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.6e-20 104.0 72 68.1
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.0e-19 98.2 106 48.1
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.2e-18 97.8 166 31.3
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 7.1e-16 88.6 51 76.5
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.6e-15 85.9 63 66.7
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.0e-14 83.2 54 68.5
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 8.1e-12 75.1 162 36.4
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.0e-06 58.2 32 78.1


User provided reference genes

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