Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 3.5e-103 378.3 185 100.0
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.0e-94 348.6 185 92.4
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 6.6e-94 347.4 185 92.4
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 8.6e-94 347.1 185 91.4
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.3e-93 344.0 187 90.9
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-91 340.1 182 91.2
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 4.9e-89 331.3 181 89.5
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 4.6e-87 324.7 178 88.2
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 6.0e-87 324.3 184 85.9
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.8e-87 323.9 179 88.8
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 7.8e-87 323.9 179 88.8
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.9e-86 321.6 179 88.3
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 6.6e-86 320.9 185 84.9
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.1e-85 320.1 179 87.7
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.1e-85 320.1 179 87.7
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.5e-85 319.7 179 87.7
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 2.5e-85 318.9 185 84.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.3e-85 318.2 182 85.7
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 9.6e-85 317.0 183 84.7
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 9.6e-85 317.0 176 86.9
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.2e-84 316.6 187 83.4
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.2e-84 316.6 185 82.7
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.2e-84 316.6 180 87.2
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.2e-84 316.6 185 83.2
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.6e-84 316.2 182 85.2
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.6e-84 316.2 187 82.4
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 2.1e-84 315.8 186 83.9
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 4.7e-84 314.7 182 85.7
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 6.2e-84 314.3 190 82.1
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.1e-83 313.5 182 84.1
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.1e-83 313.5 179 86.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.1e-83 313.5 185 83.2
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.4e-83 313.2 186 82.3
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.4e-83 313.2 187 82.9
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 1.8e-83 312.8 188 81.9
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 1.8e-83 312.8 178 86.5
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.8e-83 312.8 183 83.6
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 3.1e-83 312.0 187 83.4
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.1e-83 312.0 182 83.0
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 3.1e-83 312.0 179 84.9
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 4.0e-83 311.6 186 81.2
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 5.2e-83 311.2 186 82.3
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.2e-83 311.2 187 81.8
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.9e-83 310.8 178 84.8
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.9e-83 310.8 187 82.4
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.9e-83 310.8 178 85.4
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 6.9e-83 310.8 185 82.2
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 6.9e-83 310.8 185 81.6
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 8.9e-83 310.5 185 82.2
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.2e-82 310.1 186 81.2
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.2e-82 310.1 178 86.0
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.5e-82 309.7 184 82.1
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.6e-82 308.9 186 83.9
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 2.6e-82 308.9 187 80.7
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 4.4e-82 308.1 182 81.3
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 5.8e-82 307.8 182 83.0
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 5.8e-82 307.8 177 86.4
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 5.8e-82 307.8 182 82.4
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 5.8e-82 307.8 186 80.1
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 7.6e-82 307.4 182 82.4
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 7.6e-82 307.4 188 82.4
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 9.9e-82 307.0 175 84.6
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 9.9e-82 307.0 180 82.2
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.3e-81 306.6 179 85.5
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.7e-81 306.2 185 80.5
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.2e-81 305.8 177 83.6
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 4.9e-81 304.7 178 85.4
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.1e-80 303.5 186 78.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.4e-80 303.1 188 79.8
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.4e-80 302.4 181 81.2
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 2.4e-80 302.4 178 82.6
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.4e-80 302.4 178 82.6
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 2.4e-80 302.4 178 82.6
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.4e-80 302.4 178 82.6
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 3.2e-80 302.0 178 82.6
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.2e-80 302.0 184 78.3
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 7.1e-80 300.8 178 82.0
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.1e-80 300.8 178 81.5
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 9.3e-80 300.4 187 77.0
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.2e-79 300.1 180 78.3
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.2e-79 300.1 180 81.1
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.1e-79 299.3 188 78.7
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.5e-79 298.5 178 81.5
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.5e-79 298.5 179 82.7
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.5e-79 298.5 179 81.0
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.5e-79 298.5 178 80.9
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.0e-79 297.7 178 80.9
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.3e-78 296.6 182 78.6
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.3e-78 296.6 180 80.0
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.7e-78 296.2 179 81.0
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 3.9e-78 295.0 189 76.7
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 5.1e-78 294.7 188 77.1
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 5.1e-78 294.7 188 77.1
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 8.7e-78 293.9 188 76.6
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.9e-77 292.7 189 77.2
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.8e-76 288.9 183 77.6
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.2e-74 283.5 189 73.5
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.6e-74 282.3 175 80.0
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 3.4e-74 282.0 179 77.1
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.4e-74 282.0 194 73.7
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 9.9e-74 280.4 162 84.0
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 8.4e-73 277.3 188 72.9
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.9e-72 276.2 167 79.6
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.9e-72 276.2 184 74.5
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.4e-72 275.8 183 74.9
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.2e-72 275.4 179 76.0
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 3.2e-72 275.4 189 73.0
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 5.4e-72 274.6 167 82.6
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 7.1e-72 274.2 178 75.3
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.2e-71 273.5 169 75.1
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.1e-71 272.7 182 76.9
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.3e-70 270.0 185 72.4
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.7e-70 267.3 165 80.0
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-69 266.9 178 76.4
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-69 266.9 183 73.2
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 4.3e-69 265.0 181 72.4
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 4.8e-68 261.5 183 70.5
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 4.8e-68 261.5 183 70.5
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 6.2e-68 261.2 185 70.3
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.1e-67 260.4 180 71.1
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.4e-67 259.2 181 71.3
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.1e-67 258.8 181 70.7
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-67 258.8 185 69.7
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 4.0e-67 258.5 185 69.2
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 4.0e-67 258.5 185 69.2
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 4.0e-67 258.5 151 85.4
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 9.0e-67 257.3 185 68.6
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 4.5e-66 255.0 189 66.7
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 4.5e-66 255.0 181 69.1
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.7e-65 253.1 176 69.3
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.2e-65 252.7 181 69.1
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-64 250.4 176 73.9
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.1e-64 250.4 178 69.1
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 7.1e-64 247.7 185 64.3
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.3e-64 247.3 175 73.1
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.6e-60 236.5 150 74.7
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 3.7e-60 235.3 174 66.1
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 3.5e-55 218.8 131 81.7
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 1.1e-53 213.8 121 87.6
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 8.2e-52 207.6 152 68.4
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.0e-49 200.7 128 73.4
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 8.5e-49 197.6 138 70.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 4.2e-48 195.3 177 61.6
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.2e-48 195.3 113 85.8
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 7.2e-48 194.5 163 62.0
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 5.1e-46 188.3 137 71.5
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 2.5e-45 186.0 182 57.7
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 7.4e-45 184.5 177 60.5
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 6.3e-44 181.4 168 59.5
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 8.2e-44 181.0 162 56.2
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.9e-43 177.9 121 76.9
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.4e-38 163.7 104 77.9
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.4e-38 163.7 123 71.5
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 3.2e-32 142.5 106 67.0
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 5.7e-29 131.7 100 63.0
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 7.4e-29 131.3 74 82.4
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 4.1e-27 125.6 74 79.7
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 5.3e-27 125.2 74 78.4
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 3.8e-25 119.0 71 78.9
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.5e-24 115.2 112 57.1
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 7.5e-21 104.8 88 65.9
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.4e-19 99.8 125 49.6
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.5e-16 90.5 130 44.6
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 7.2e-16 88.2 152 38.8
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.8e-14 81.6 50 80.0
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 3.1e-11 72.8 73 47.9
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.2e-08 62.8 132 35.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 9.5e-08 61.2 147 32.0
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-07 60.5 54 50.0
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.1e-07 60.1 123 35.0
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 4.7e-07 58.9 60 51.7


User provided reference genes

Program Settings