Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2489.5 1291 100.0
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2428.7 1291 97.6
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2324.7 1290 93.6
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2322.7 1290 93.3
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2073.1 1304 81.7
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2030.4 1305 80.2
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2004.9 1304 79.9
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1993.0 1304 79.3
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1983.4 1302 78.7
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 1967.2 1304 78.1
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 1960.3 1304 77.4
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 1960.3 1300 77.8
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 1959.9 1320 77.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1957.2 1291 78.5
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 1956.4 1302 77.6
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 1946.0 1304 76.9
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1938.3 1304 77.0
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 1937.5 1303 77.1
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 1936.4 1303 75.7
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 1934.1 1304 75.6
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 1930.6 1301 76.8
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1929.8 1304 76.2
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 1927.5 1304 76.2
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 1921.0 1307 75.7
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1916.4 1304 75.9
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 1915.2 1304 76.4
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1914.4 1304 75.7
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 1914.0 1306 76.2
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 1906.7 1303 74.9
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 1906.7 1304 74.8
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1899.4 1301 75.7
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1893.2 1290 77.8
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 1890.2 1336 72.9
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 1882.8 1298 74.9
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1880.5 1298 75.0
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1873.2 1304 74.5
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1869.4 1295 74.7
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1866.7 1302 74.3
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1866.7 1303 74.3
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1855.5 1304 74.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 1855.1 1304 73.9
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1852.4 1304 73.5
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1850.9 1303 73.5
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1849.3 1302 73.7
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 1848.6 1303 73.4
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1847.4 1303 73.5
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 1845.1 1302 73.3
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1840.9 1303 73.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 1837.0 1302 73.8
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1836.6 1303 73.3
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1836.2 1303 73.0
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1833.2 1347 72.8
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 1832.8 1298 73.0
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 1831.6 1302 73.6
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1830.5 1303 72.7
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 1829.7 1304 72.5
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 1828.5 1304 72.3
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1825.8 1290 72.9
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1823.9 1296 73.1
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1820.4 1302 72.7
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1813.9 1303 71.9
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1813.1 1291 72.6
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1812.0 1301 72.2
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1803.1 1300 72.3
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1798.1 1291 72.4
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1785.0 1295 71.8
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1784.2 1302 71.0
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1776.1 1296 70.6
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1759.6 1299 70.5
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1746.5 1303 70.1
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1744.9 1296 69.3
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1744.6 1280 71.5
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1743.8 1308 70.0
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1740.3 1298 69.2
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1739.5 1304 69.9
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1738.0 1303 69.6
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1729.9 1301 70.0
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1728.8 1302 68.4
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1728.0 1303 69.1
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1727.6 1301 69.7
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1723.4 1266 71.0
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1721.8 1298 69.6
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1720.7 1266 71.3
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1719.5 1308 69.3
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1717.6 1296 69.4
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1716.4 1298 69.6
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1713.7 1308 69.0
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1703.0 1307 68.5
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1702.6 1300 68.3
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1701.4 1300 68.7
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1699.5 1302 68.4
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1698.7 1313 68.8
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1697.2 1309 68.8
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1696.8 1310 68.5
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1696.8 1308 68.4
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1696.0 1307 68.3
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1694.1 1300 67.8
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1682.5 1087 80.1
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1661.7 1272 68.8
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1608.2 1317 64.8
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1581.6 1290 63.7
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1565.1 1328 65.1
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1550.8 1290 65.0
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1544.6 1207 71.4
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1537.3 1296 62.0
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1532.7 1035 77.7
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1514.2 1290 66.7
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1486.5 1298 60.2
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1448.3 1290 64.5
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1401.0 1087 67.6
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1343.9 1324 54.8
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1310.8 1334 54.7
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1301.6 1081 68.2
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1238.0 799 78.8
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1132.5 735 78.9
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1089.3 920 67.7
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 6.9e-307 1057.7 1028 55.7
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 7.2e-304 1047.7 1112 53.6
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 8.7e-302 1040.8 740 76.2
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 3.1e-259 899.4 701 66.3
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 9.2e-259 897.9 768 61.7
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 6.0e-210 735.7 559 67.8
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.2e-195 686.8 599 60.4
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 3.9e-169 600.1 438 73.7
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 6.3e-159 566.2 474 65.4
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 3.4e-152 543.9 702 47.3
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.5e-149 533.9 389 69.9
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 4.1e-134 483.8 386 67.4
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 3.9e-132 477.2 570 49.8
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 8.9e-121 439.5 397 60.7
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.5e-112 412.1 774 37.0
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 9.0e-105 386.3 342 61.7
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 2.1e-93 348.6 214 82.2
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 6.0e-85 320.5 398 50.8
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 6.0e-77 293.9 228 67.1
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 7.9e-77 293.5 233 65.2
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.8e-76 292.4 225 64.4
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 9.0e-73 280.0 231 63.2
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.0e-71 276.6 177 76.8
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 6.5e-71 273.9 265 57.0
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.3e-66 259.6 195 66.2
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 6.3e-66 257.3 1615 23.7
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 2.8e-58 231.9 1415 23.7
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 6.3e-58 230.7 1396 24.6
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.8e-44 186.0 188 59.0
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.4e-41 176.4 190 52.1
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.7e-39 169.5 223 50.2
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.2e-32 146.7 131 58.8
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 2.0e-32 146.0 127 56.7
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.0e-28 131.7 343 31.2
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 4.4e-27 128.3 101 66.3
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.9e-18 99.0 136 43.4
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 2.0e-16 92.8 555 24.5
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.3e-15 89.4 112 49.1
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.5e-14 85.9 70 60.0
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 3.0e-07 62.4 36 83.3
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 7.3e-06 57.8 130 30.0
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 7.3e-06 57.8 181 28.2


User provided reference genes

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