Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.7e-259 899.0 530 100.0
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 7.4e-239 830.5 446 92.8
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 9.6e-239 830.1 446 92.6
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 3.2e-234 815.1 424 91.5
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 2.3e-224 782.3 415 87.2
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 3.3e-223 778.5 417 86.3
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.3e-222 774.2 415 86.5
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.8e-221 772.7 417 86.3
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 2.6e-220 768.8 417 85.6
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.3e-219 766.5 433 83.6
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 8.5e-219 763.8 416 84.4
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.6e-217 759.6 428 83.9
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 8.8e-216 753.8 419 85.2
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.1e-215 753.4 418 84.0
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.5e-215 753.1 418 84.2
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 2.0e-215 752.7 421 82.7
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 4.3e-215 751.5 417 84.4
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 5.7e-215 751.1 448 82.8
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.3e-214 750.0 424 84.9
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.7e-214 749.6 418 83.7
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.3e-214 747.7 415 85.1
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 1.1e-213 746.9 420 83.1
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.4e-213 746.5 417 84.2
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.8e-213 746.1 419 82.3
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 4.1e-213 745.0 414 82.9
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 5.3e-213 744.6 420 81.7
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 5.3e-213 744.6 418 83.0
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 6.9e-213 744.2 421 83.4
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 9.1e-213 743.8 417 83.0
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 9.1e-213 743.8 433 83.8
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.2e-212 743.4 421 83.6
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 2.0e-212 742.7 421 83.1
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 2.6e-212 742.3 421 82.9
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.3e-211 740.0 417 82.0
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 2.2e-211 739.2 436 80.5
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 6.5e-211 737.6 420 81.7
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 6.5e-211 737.6 417 82.7
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.4e-210 736.5 431 80.5
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 1.9e-210 736.1 418 81.3
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.9e-210 736.1 420 81.9
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 5.5e-210 734.6 421 81.0
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.6e-209 733.0 418 81.6
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.7e-209 732.3 424 83.0
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 4.7e-209 731.5 427 81.0
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 7.9e-209 730.7 423 82.3
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 7.9e-209 730.7 417 82.0
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.0e-208 730.3 424 82.8
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.3e-208 729.2 423 83.0
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.8e-208 727.2 425 82.6
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 5.7e-207 724.5 425 80.7
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 5.7e-207 724.5 425 80.7
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 2.2e-206 722.6 390 85.6
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 2.2e-206 722.6 422 80.8
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.8e-206 722.2 421 80.3
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 6.3e-206 721.1 416 82.7
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 6.3e-206 721.1 423 80.6
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 4.1e-205 718.4 389 85.3
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 5.9e-204 714.5 456 75.0
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.0e-203 713.8 420 81.0
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 1.9e-202 709.5 455 75.8
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.9e-202 709.5 459 73.9
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 8.0e-201 704.1 417 80.8
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 2.6e-199 699.1 421 77.9
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.2e-198 696.0 422 79.6
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 2.8e-198 695.7 422 79.6
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 9.1e-197 690.6 416 78.1
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 2.9e-195 685.6 423 78.3
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 7.2e-194 681.0 422 76.5
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 8.0e-193 677.6 429 76.5
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.0e-192 677.2 387 82.4
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 3.0e-192 675.6 426 76.5
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 6.3e-190 667.9 419 74.5
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.8e-189 666.4 421 75.1
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.6e-188 663.3 422 76.8
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 2.7e-188 662.5 420 73.8
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.7e-188 662.5 350 88.3
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.4e-184 650.2 420 72.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 6.8e-184 647.9 420 72.4
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 6.8e-184 647.9 417 73.1
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 3.4e-183 645.6 423 72.3
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 4.4e-183 645.2 419 72.1
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 7.5e-183 644.4 422 72.0
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 3.7e-182 642.1 418 72.0
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 5.4e-181 638.3 377 80.1
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 7.0e-181 637.9 434 70.0
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 7.0e-181 637.9 419 71.6
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.2e-180 637.1 423 71.9
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 4.5e-180 635.2 434 69.8
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.1e-178 630.6 430 70.0
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.9e-178 629.8 386 77.7
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.0e-177 624.4 386 79.0
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 1.4e-176 623.6 422 69.9
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.4e-176 623.6 418 72.2
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 5.2e-176 621.7 420 70.7
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 7.5e-175 617.8 363 80.4
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 9.8e-175 617.5 418 69.9
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.9e-174 615.9 390 76.2
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 4.9e-174 615.1 420 70.0
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 4.1e-173 612.1 426 69.2
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.6e-172 610.1 390 73.3
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 3.0e-171 605.9 439 69.0
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.7e-169 598.6 418 69.1
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 6.2e-169 598.2 418 70.6
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.4e-165 587.0 418 67.2
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 7.8e-164 581.3 395 70.6
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 2.6e-159 566.2 305 85.2
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 3.7e-158 562.4 319 81.5
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 3.2e-157 559.3 315 82.9
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.1e-152 544.3 341 75.7
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 8.7e-139 498.0 335 71.6
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 7.6e-135 485.0 293 79.5
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.6e-132 477.2 311 73.3
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.7e-129 466.1 428 59.6
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 2.7e-124 449.9 401 55.6
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.5e-119 434.1 449 51.2
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 5.8e-119 432.2 323 65.9
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.8e-115 420.6 363 56.7
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.2e-111 407.9 323 60.7
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 9.3e-109 398.3 218 82.1
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 7.4e-106 388.7 191 92.7
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.7e-102 377.5 325 52.9
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 2.8e-97 360.1 231 79.2
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 2.0e-90 337.4 423 46.1
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 1.2e-84 318.2 259 62.2
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 7.0e-72 275.8 254 59.1
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.0e-58 231.1 151 74.8
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 1.3e-49 201.8 114 82.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 2.2e-49 201.1 136 75.0
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 1.6e-47 194.9 167 62.9
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.3e-33 148.7 290 35.2
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 1.1e-29 135.6 107 66.4
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.4e-27 127.9 79 77.2
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 9.0e-27 125.9 270 34.4
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 3.4e-26 124.0 92 65.2
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 2.8e-20 104.4 319 28.2
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.6e-18 96.3 80 58.8
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 1.9e-16 91.7 52 78.8
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 7.4e-13 79.7 83 53.0
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.9e-09 67.8 29 93.1
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 6.7e-06 56.6 28 89.3


User provided reference genes

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