Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G511.9 Capsicum annuum HOM05D000216 ORTHO05D000634 3.2e-86 321.6 154 100.0
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 3.0e-84 315.1 151 99.3
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 3.0e-84 315.1 151 99.3
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 8.8e-84 313.5 151 98.7
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 3.7e-82 308.1 151 97.4
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.3e-82 307.4 151 97.4
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 5.3e-81 304.3 151 96.7
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 5.7e-75 284.3 151 89.4
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 2.8e-74 282.0 151 86.8
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 2.8e-74 282.0 151 86.8
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 2.8e-74 282.0 151 86.8
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 2.8e-74 282.0 151 86.8
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 6.3e-74 280.8 151 88.7
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 4.1e-73 278.1 151 86.1
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 4.1e-73 278.1 151 87.4
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.3e-71 273.1 153 85.0
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.3e-71 273.1 155 85.2
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 6.5e-71 270.8 151 83.4
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 3.2e-70 268.5 151 82.1
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 9.4e-70 266.9 155 83.2
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.4e-68 263.1 156 80.8
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 1.8e-68 262.7 151 82.8
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.0e-67 259.2 155 79.4
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 5.7e-67 257.7 155 80.6
Atru.chr6.1615 Acer truncatum HOM05D000216 ORTHO05D000634 7.5e-67 257.3 145 82.1
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.5e-67 257.3 151 81.5
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 1.3e-66 256.5 155 79.4
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 1.3e-66 256.5 155 79.4
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 1.3e-66 256.5 155 79.4
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 1.3e-66 256.5 155 79.4
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 6.3e-66 254.2 155 78.1
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 3.1e-65 251.9 151 78.8
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 9.1e-65 250.4 155 78.1
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.9e-64 247.7 146 81.5
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 6.6e-63 244.2 151 79.5
Lj1g0027665 Lotus japonicus HOM05D000216 ORTHO05D000634 1.1e-62 243.4 152 77.6
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.1e-62 243.4 152 77.6
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 5.5e-62 241.1 157 74.5
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 9.5e-62 240.4 153 76.5
Hund04025 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.1e-61 237.7 151 75.5
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 5.2e-60 234.6 139 82.0
Solyc08g028910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.0e-59 232.6 131 87.0
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 1.8e-57 226.1 147 76.9
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 9.2e-57 223.8 159 71.1
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 3.1e-52 208.8 139 75.5
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 5.8e-51 204.5 151 66.2
Migut.K00966 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.4e-49 199.9 143 71.3
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 1.4e-49 199.9 151 64.2
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-49 198.7 143 72.7
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-49 198.7 143 72.7
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-49 198.7 143 72.7
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-49 198.7 143 72.7
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 5.4e-49 198.0 151 65.6
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 5.4e-49 198.0 151 65.6
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 5.4e-49 198.0 151 65.6
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 5.4e-49 198.0 151 65.6
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 5.4e-49 198.0 151 65.6
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.0e-47 193.7 117 78.6
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.0e-47 192.2 119 77.3
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 3.0e-47 192.2 151 65.6
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.6e-47 190.7 111 84.7
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.5e-46 189.9 132 73.5
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-46 189.1 112 83.0
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 2.5e-46 189.1 96 96.9
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-45 186.8 151 64.2
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.6e-45 186.4 124 74.2
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 8.1e-45 184.1 99 89.9
Gorai.013G018800 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.0e-43 179.5 142 67.6
Gohir.D13G016950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.9e-42 175.6 142 66.2
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 4.1e-41 171.8 141 61.7
Gohir.A07G183950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.1e-41 171.0 103 79.6
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 6.6e-39 164.5 114 71.1
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.3e-38 161.8 98 81.6
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 5.6e-38 161.4 144 61.8
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 5.6e-38 161.4 100 80.0
Lalb_Chr06g0173101 Lupinus albus HOM05D000216 ORTHO05D000634 5.2e-36 154.8 107 73.8
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 8.9e-36 154.1 98 76.5
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 4.4e-35 151.8 82 86.6
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 9.9e-35 150.6 98 74.5
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 2.9e-34 149.1 79 91.1
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 6.4e-34 147.9 80 90.0
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 6.4e-34 147.9 92 80.4
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 8.4e-34 147.5 79 89.9
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 1.4e-33 146.7 83 85.5
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.9e-33 146.4 93 76.3
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.9e-33 146.4 93 76.3
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 3.2e-33 145.6 83 85.5
Oeu010681.1 Olea europaea HOM05D000216 ORTHO05D000634 4.1e-33 145.2 86 79.1
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 5.4e-33 144.8 85 77.6
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 7.1e-33 144.4 85 77.6
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 1.2e-32 143.7 79 88.6
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 3.5e-32 142.1 79 86.1
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.5e-32 142.1 79 86.1
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 3.0e-31 139.0 77 85.7
TPR.G26480 Trifolium pratense HOM05D000216 ORTHO05D000634 6.6e-31 137.9 87 74.7
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 9.6e-30 134.0 77 79.2
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 1.2e-29 133.7 75 85.3
Gorai.002G075300 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.6e-29 133.3 71 90.1
Lalb_Chr13g0292901 Lupinus albus HOM05D000216 ORTHO05D000634 1.6e-29 133.3 78 83.3
HanXRQChr07g0188321 Helianthus annuus HOM05D000216 ORTHO05D000634 2.4e-28 129.4 68 91.2
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 6.8e-28 127.9 148 50.7
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.2e-27 127.1 149 52.3
Solyc05g020010.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 7.1e-25 117.9 64 90.6
HanXRQChr00c0823g0577631 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 116.7 62 88.7
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 116.7 80 73.8
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.1e-22 110.5 80 70.0
GSVIVG01030958001 Vitis vinifera HOM05D000216 ORTHO05D000634 1.9e-22 109.8 61 82.0
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 3.3e-22 109.0 61 85.2
Lalb_Chr23g0274571 Lupinus albus HOM05D000216 ORTHO05D000634 3.3e-22 109.0 70 77.1
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.2e-21 104.8 77 66.2
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.6e-19 99.4 92 63.0
Nitab4.5_0004184g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.4e-17 93.6 54 85.2
arahy.Tifrunner.gnm1.ann1.EI2YTD Arachis hypogaea HOM05D000890 ORTHO05D000697 9.3e-17 90.9 55 80.0
CARHR056720 Cardamine hirsuta HOM05D000216 ORTHO05D000634 9.3e-17 90.9 48 89.6
HanXRQChr14g0436641 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-16 90.5 50 76.0
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 4.6e-16 88.6 77 58.4
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 2.5e-14 82.8 43 90.7
CAN.G213.14 Capsicum annuum HOM05D000216 ORTHO05D000634 3.3e-14 82.4 39 100.0
AUR62041877 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.4e-12 77.0 63 66.7
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 2.4e-12 76.3 105 41.0
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 5.3e-12 75.1 43 81.4
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 6.9e-12 74.7 41 87.8
Lalb_Chr06g0173001 Lupinus albus HOM05D000216 ORTHO05D000634 5.8e-11 71.6 52 69.2
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 4.9e-10 68.6 49 65.3
Aa31csc39G140 Aethionema arabicum HOM05D000216 ORTHO05D000634 6.4e-10 68.2 102 38.2
Mapoly0087s0067 Marchantia polymorpha HOM05D000216 ORTHO05D000634 1.6e-08 63.5 54 53.7
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 2.3e-07 59.7 38 76.3


User provided reference genes

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