Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 7.1e-215 750.4 386 100.0
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 1.0e-173 613.6 387 85.5
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 2.4e-170 602.4 384 85.4
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 8.5e-168 594.0 398 80.4
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 2.5e-164 582.4 387 81.9
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 9.7e-164 580.5 438 73.5
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 4.2e-135 485.3 380 69.5
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 1.2e-134 483.8 400 67.8
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 1.4e-133 480.3 380 69.5
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.8e-133 479.9 381 68.5
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.8e-133 479.9 381 68.5
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 5.2e-133 478.4 394 65.7
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 8.8e-133 477.6 382 68.8
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 1.5e-132 476.9 381 68.2
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 2.0e-132 476.5 392 66.8
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 7.5e-132 474.6 391 68.0
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 1.7e-131 473.4 396 67.2
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 2.8e-131 472.6 381 68.0
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 7.0e-130 468.0 365 69.0
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 7.0e-130 468.0 382 67.3
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 7.0e-130 468.0 395 66.8
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 9.1e-130 467.6 383 68.1
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 1.2e-129 467.2 390 65.6
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 1.2e-129 467.2 381 66.9
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 5.9e-129 464.9 395 66.3
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 1.0e-128 464.2 387 66.9
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 2.3e-128 463.0 381 66.9
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 2.3e-128 463.0 398 65.1
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 2.9e-128 462.6 382 66.5
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 5.0e-128 461.8 387 66.4
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 1.1e-127 460.7 359 69.9
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 1.1e-127 460.7 386 66.6
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 2.5e-127 459.5 389 65.3
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 3.2e-127 459.1 379 68.3
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 3.2e-127 459.1 389 65.0
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 4.2e-127 458.8 367 67.3
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 1.6e-126 456.8 387 65.1
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 2.1e-126 456.4 415 63.1
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 2.8e-126 456.1 383 64.8
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 4.7e-126 455.3 385 64.9
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 1.0e-125 454.1 380 65.8
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 1.4e-125 453.8 390 64.6
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 2.3e-125 453.0 366 67.2
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 4.0e-125 452.2 387 64.1
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 1.5e-124 450.3 389 64.0
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 2.0e-124 449.9 451 59.2
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 3.4e-124 449.1 382 64.9
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 2.8e-123 446.0 319 72.7
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 4.9e-123 445.3 376 63.6
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.4e-122 443.7 395 65.6
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 5.4e-122 441.8 394 64.0
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 7.0e-122 441.4 390 62.6
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 7.0e-122 441.4 397 63.2
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 9.2e-122 441.0 380 64.5
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 1.3e-120 437.2 389 62.7
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 2.3e-120 436.4 389 62.2
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 2.9e-120 436.0 386 63.2
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 5.0e-120 435.3 383 63.7
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 2.5e-119 433.0 390 60.8
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 5.6e-119 431.8 407 60.7
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 1.6e-118 430.3 384 61.5
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 2.1e-118 429.9 388 61.1
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 6.1e-118 428.3 408 61.0
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 6.1e-118 428.3 373 63.8
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 6.1e-118 428.3 373 63.8
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 1.0e-117 427.6 386 62.4
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 1.0e-117 427.6 386 62.4
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 3.0e-117 426.0 390 61.0
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 5.2e-117 425.2 395 62.8
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 8.9e-117 424.5 384 61.7
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 1.5e-116 423.7 390 60.0
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 3.4e-116 422.5 386 61.9
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 7.5e-116 421.4 274 75.9
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 9.8e-116 421.0 399 60.2
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 2.2e-115 419.9 387 59.2
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 3.7e-115 419.1 378 62.4
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.8e-114 416.8 285 74.0
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 7.0e-114 414.8 345 64.6
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.2e-113 414.1 285 73.7
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 1.0e-112 411.0 417 59.0
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 1.1e-111 407.5 397 58.9
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.2e-110 404.1 384 59.4
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 8.0e-110 401.4 399 58.6
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 2.3e-109 399.8 231 83.5
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 2.0e-108 396.7 400 58.8
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 5.8e-108 395.2 386 59.3
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 5.8e-108 395.2 282 71.3
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 4.9e-107 392.1 294 70.4
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 3.5e-105 386.0 297 67.7
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 5.0e-104 382.1 291 68.7
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 5.0e-104 382.1 378 56.9
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 2.1e-102 376.7 288 68.8
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 6.2e-102 375.2 298 67.4
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 9.9e-100 367.9 291 64.9
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 4.6e-97 359.0 409 52.8
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 6.8e-93 345.1 399 50.6
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 8.4e-91 338.2 208 77.9
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 1.2e-89 334.3 267 64.0
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 5.1e-88 328.9 426 46.9
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.9e-87 327.0 254 67.7
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 5.6e-87 325.5 285 63.2
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 5.6e-87 325.5 242 69.4
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.1e-82 311.2 199 77.4
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 1.0e-80 304.7 405 51.1
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.3e-80 304.3 330 55.5
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 2.8e-78 296.6 240 67.9
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 4.8e-78 295.8 382 50.0
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 1.1e-69 268.1 215 66.5
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 1.6e-65 254.2 259 53.7
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 2.7e-65 253.4 159 78.0
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 1.4e-61 241.1 243 51.0
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 3.5e-57 226.5 319 48.0
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 4.6e-57 226.1 256 52.7
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 3.4e-44 183.3 199 45.7
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 2.6e-39 167.2 259 37.1
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 6.3e-30 136.0 209 35.4
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 7.0e-29 132.5 144 55.6
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 4.5e-28 129.8 151 54.3
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 1.3e-22 111.7 77 72.7
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 7.5e-15 85.9 146 39.0
MBI04_g33407_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 9.5e-10 68.9 131 42.0
Cpa.g.sc48.16 Carica papaya HOM05D006305 ORTHO05D007984 3.6e-09 67.0 108 41.7
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 3.7e-06 57.0 132 39.4


User provided reference genes

Program Settings