Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G453.6 Capsicum annuum HOM05D001758 ORTHO05D018856 1.3e-83 313.5 224 100.0
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 1.8e-29 133.7 208 45.2
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 4.0e-29 132.5 211 44.5
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 5.3e-29 132.1 211 44.5
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 5.8e-28 128.6 214 42.5
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 7.6e-28 128.3 214 42.5
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 1.0e-27 127.9 214 42.5
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 1.2e-25 120.9 213 44.1
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 5.1e-24 115.5 151 47.7
CSS0042527 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 5.1e-24 115.5 151 47.7
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 1.5e-23 114.0 215 39.1
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 2.1e-22 110.2 218 38.5
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 2.4e-21 106.7 236 36.9
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 3.1e-21 106.3 236 36.9
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 5.3e-21 105.5 215 38.6
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 9.0e-21 104.8 152 44.7
Cfa012203 Carpinus fangiana HOM05D001758 ORTHO05D004430 1.5e-20 104.0 129 51.9
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 2.0e-20 103.6 153 42.5
CAN.G453.10 Capsicum annuum HOM05D001758 ORTHO05D018856 7.6e-20 101.7 133 47.4
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 7.6e-20 101.7 140 48.6
CAN.G491.13 Capsicum annuum HOM05D001758 ORTHO05D018856 1.3e-19 100.9 139 49.6
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 1.7e-19 100.5 138 47.8
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 2.2e-19 100.1 215 37.7
CAN.G205.21 Capsicum annuum HOM05D001758 ORTHO05D018856 2.9e-19 99.8 141 49.6
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 2.9e-19 99.8 215 35.3
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 3.8e-19 99.4 147 45.6
Actinidia33743 Actinidia chinensis HOM05D001758 ORTHO05D004430 5.0e-19 99.0 214 34.6
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 6.5e-19 98.6 144 44.4
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 8.5e-19 98.2 219 37.9
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 8.5e-19 98.2 154 44.8
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 8.5e-19 98.2 155 46.5
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 1.1e-18 97.8 207 36.2
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 1.4e-18 97.4 143 42.0
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 1.4e-18 97.4 210 38.6
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 1.9e-18 97.1 218 37.6
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 1.9e-18 97.1 139 43.9
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 2.5e-18 96.7 146 44.5
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 3.2e-18 96.3 160 41.9
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 3.2e-18 96.3 154 42.9
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 4.2e-18 95.9 205 35.1
Lj8A218T22 Lonicera japonica HOM05D001758 ORTHO05D004430 4.2e-18 95.9 218 34.4
COL.COLO4_34497 Corchorus olitorius HOM05D001758 ORTHO05D004430 5.5e-18 95.5 151 45.0
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 5.5e-18 95.5 218 36.7
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 9.3e-18 94.7 209 35.9
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 1.2e-17 94.4 205 35.6
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 1.2e-17 94.4 218 37.2
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 1.2e-17 94.4 149 46.3
Dinv38922 Davidia involucrata HOM05D001758 ORTHO05D004430 1.6e-17 94.0 131 45.8
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 1.6e-17 94.0 158 41.1
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 1.6e-17 94.0 154 43.5
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 2.1e-17 93.6 205 35.6
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 2.1e-17 93.6 149 44.3
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 2.1e-17 93.6 210 35.7
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 2.1e-17 93.6 153 41.8
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 2.7e-17 93.2 130 46.9
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 2.7e-17 93.2 130 46.9
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 2.7e-17 93.2 220 36.4
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 3.6e-17 92.8 156 41.0
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 4.6e-17 92.4 240 34.6
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 6.1e-17 92.0 149 43.0
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 6.1e-17 92.0 149 43.0
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 6.1e-17 92.0 149 43.0
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 6.1e-17 92.0 149 43.0
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 6.1e-17 92.0 149 43.0
FvH4_5g02830 Fragaria vesca HOM05D001758 ORTHO05D004430 6.1e-17 92.0 220 35.9
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 6.1e-17 92.0 220 35.9
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 6.1e-17 92.0 220 35.9
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 6.1e-17 92.0 149 43.0
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 6.1e-17 92.0 146 45.2
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 7.9e-17 91.7 217 34.6
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 7.9e-17 91.7 145 44.8
Haze_08813 Corylus avellana HOM05D001758 ORTHO05D004430 7.9e-17 91.7 154 42.2
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 7.9e-17 91.7 156 42.3
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 7.9e-17 91.7 214 35.0
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 7.9e-17 91.7 213 35.2
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 7.9e-17 91.7 146 39.7
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 1.0e-16 91.3 143 44.1
Glyma.11G095501 Glycine max HOM05D001758 ORTHO05D004430 1.0e-16 91.3 196 36.7
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 1.3e-16 90.9 215 34.9
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 1.3e-16 90.9 152 44.1
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.8e-16 90.5 152 42.1
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 1.8e-16 90.5 152 42.1
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 1.8e-16 90.5 203 36.0
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 2.3e-16 90.1 149 44.3
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 2.3e-16 90.1 152 42.1
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 3.0e-16 89.7 248 33.9
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 3.0e-16 89.7 144 45.1
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 3.0e-16 89.7 148 39.2
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 3.0e-16 89.7 210 36.2
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 3.0e-16 89.7 147 40.8
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 3.0e-16 89.7 153 42.5
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 3.0e-16 89.7 149 38.3
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 3.9e-16 89.4 130 46.2
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 3.9e-16 89.4 130 46.2
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 3.9e-16 89.4 143 43.4
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 5.1e-16 89.0 214 34.6
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 5.1e-16 89.0 153 39.2
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 6.7e-16 88.6 149 42.3
Gohir.A08G184000 Gossypium hirsutum HOM05D001758 ORTHO05D004430 6.7e-16 88.6 151 42.4
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 8.7e-16 88.2 154 41.6
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 1.1e-15 87.8 211 36.0
MBI10_g48303_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 1.1e-15 87.8 150 41.3
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 1.1e-15 87.8 154 41.6
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 1.1e-15 87.8 205 35.6
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 1.5e-15 87.4 149 42.3
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 1.5e-15 87.4 211 35.5
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.5e-15 87.4 151 40.4
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 1.5e-15 87.4 212 35.4
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 1.5e-15 87.4 154 40.3
CDE08G1656 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 2.5e-15 86.7 212 35.4
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 2.5e-15 86.7 150 40.0
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 2.5e-15 86.7 217 35.9
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 2.5e-15 86.7 211 33.6
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 4.3e-15 85.9 149 41.6
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 4.3e-15 85.9 146 41.8
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 4.3e-15 85.9 153 42.5
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 5.7e-15 85.5 144 42.4
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 5.7e-15 85.5 143 42.7
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 5.7e-15 85.5 217 32.7
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 7.4e-15 85.1 219 35.2
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 7.4e-15 85.1 151 40.4
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 7.4e-15 85.1 152 38.8
ClCG01G002530 Citrullus lanatus HOM05D001758 ORTHO05D004430 1.3e-14 84.3 150 37.3
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 1.3e-14 84.3 212 34.0
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 1.3e-14 84.3 150 38.0
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 2.2e-14 83.6 154 41.6
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 2.8e-14 83.2 149 42.3
Lsat_1_v5_gn_6_5441 Lactuca sativa HOM05D001758 ORTHO05D004430 2.8e-14 83.2 203 33.5
Cpa.g.sc180.11 Carica papaya HOM05D001758 ORTHO05D004430 3.7e-14 82.8 165 40.0
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 6.3e-14 82.0 211 32.7
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 1.8e-13 80.5 150 36.7
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 2.4e-13 80.1 150 36.7
DCAR_005564 Daucus carota HOM05D001758 ORTHO05D004430 2.4e-13 80.1 148 37.2
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 2.4e-13 80.1 150 37.3
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 3.1e-13 79.7 221 31.7
CAN.G849.10 Capsicum annuum HOM05D001758 ORTHO05D004430 4.1e-13 79.3 55 76.4
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 5.3e-13 79.0 215 34.0
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 1.2e-12 77.8 219 31.1
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 1.5e-12 77.4 211 32.7
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 4.5e-12 75.9 211 32.2
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 5.9e-12 75.5 208 33.2
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 1.0e-11 74.7 137 40.1
CAN.G1081.1 Capsicum annuum HOM05D001758 ORTHO05D018856 2.9e-11 73.2 143 37.8
SEGI_36929 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 6.5e-11 72.0 147 37.4
CAN.G594.6 Capsicum annuum HOM05D001758 ORTHO05D018856 3.2e-10 69.7 110 45.5
Nn5g30834 Nelumbo nucifera HOM05D001758 ORTHO05D004430 1.6e-09 67.4 217 30.4
BcaNung04480 Brassica carinata HOM05D001758 ORTHO05D004430 6.1e-09 65.5 108 41.7
Ah.07g196400 Amaranthus hybridus HOM05D001758 ORTHO05D004430 3.9e-08 62.8 88 44.3
Lj2A182G26 Lonicera japonica HOM05D001758 ORTHO05D023731 3.9e-08 62.8 94 44.7
SMO298G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D004430 6.7e-08 62.0 134 36.6
arahy.Tifrunner.gnm1.ann1.Z0QB2S Arachis hypogaea HOM05D001758 ORTHO05D023731 2.6e-07 60.1 61 54.1
arahy.Tifrunner.gnm1.ann1.BNAN0X Arachis hypogaea HOM05D001758 ORTHO05D023731 4.4e-07 59.3 91 41.8
Oeu042339.1 Olea europaea HOM05D001758 ORTHO05D004430 5.7e-07 58.9 39 74.4
SHI07182 Sapria himalayana HOM05D000105 ORTHO05D000023 5.7e-07 58.9 59 57.6
CARHR230790 Cardamine hirsuta HOM05D001758 ORTHO05D023731 2.2e-06 57.0 92 44.6
Sc01g0009710 Simmondsia chinensis HOM05D001758 ORTHO05D004430 2.8e-06 56.6 88 45.5
CAN.G279.5 Capsicum annuum HOM05D001758 ORTHO05D018856 6.3e-06 55.5 45 68.9


User provided reference genes

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