Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 2.6e-214 748.4 374 100.0
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 1.3e-186 656.4 375 87.5
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 3.2e-180 635.2 380 83.9
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 7.9e-179 630.6 344 89.8
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 3.9e-162 575.1 343 81.6
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 4.7e-123 445.3 382 60.7
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 1.0e-122 444.1 353 63.2
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 1.2e-121 440.7 348 64.7
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 8.3e-120 434.5 347 62.8
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 1.6e-118 430.3 352 62.5
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 2.7e-118 429.5 343 61.5
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 3.5e-118 429.1 352 63.1
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 1.0e-117 427.6 349 63.0
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 1.3e-117 427.2 366 59.0
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 5.6e-116 421.8 342 61.1
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 1.6e-115 420.2 377 59.7
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 2.1e-115 419.9 335 62.4
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 2.1e-115 419.9 341 63.3
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 2.1e-115 419.9 343 61.2
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 2.1e-115 419.9 349 61.0
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 3.6e-115 419.1 340 62.6
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 1.8e-114 416.8 344 62.5
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 2.3e-114 416.4 338 61.5
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 2.3e-114 416.4 338 61.5
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 3.1e-114 416.0 359 60.4
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 4.0e-114 415.6 352 59.7
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 4.0e-114 415.6 367 58.9
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 6.8e-114 414.8 350 60.3
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 2.0e-113 413.3 341 62.5
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.3e-112 410.6 340 63.8
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 2.9e-112 409.5 338 60.1
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 2.9e-112 409.5 374 58.6
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 8.3e-112 407.9 350 59.1
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 1.1e-111 407.5 345 61.2
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 1.4e-111 407.1 342 62.3
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 5.4e-111 405.2 371 56.9
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 9.2e-111 404.4 372 58.9
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 9.2e-111 404.4 345 60.6
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 1.2e-110 404.1 337 60.2
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 2.1e-110 403.3 397 54.2
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 2.1e-110 403.3 371 56.3
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 4.6e-110 402.1 348 58.0
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 4.6e-110 402.1 346 59.0
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 6.0e-110 401.7 365 57.0
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 1.0e-109 401.0 339 60.8
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 1.7e-109 400.2 344 57.8
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 8.6e-109 397.9 374 56.7
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 1.5e-108 397.1 337 60.8
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 1.5e-108 397.1 434 52.3
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 1.5e-108 397.1 347 57.9
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 1.9e-108 396.7 384 55.5
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 2.5e-108 396.4 358 56.7
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 2.5e-108 396.4 358 56.7
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 2.5e-108 396.4 339 60.5
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 2.5e-108 396.4 341 60.4
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 7.3e-108 394.8 359 56.8
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 7.3e-108 394.8 352 58.2
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 7.3e-108 394.8 344 59.3
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 7.3e-108 394.8 358 57.5
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 9.5e-108 394.4 359 57.4
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 9.5e-108 394.4 345 57.7
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 3.6e-107 392.5 353 56.1
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 4.7e-107 392.1 358 56.7
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 4.7e-107 392.1 361 57.6
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 6.2e-107 391.7 398 54.3
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 6.2e-107 391.7 338 60.9
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 8.1e-107 391.3 343 60.6
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 1.8e-106 390.2 360 56.7
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.0e-106 389.0 334 60.2
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.0e-106 389.0 334 60.5
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 1.5e-105 387.1 344 57.3
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 1.5e-105 387.1 344 57.3
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 1.5e-105 387.1 334 60.5
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.5e-105 387.1 334 60.2
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 3.4e-105 386.0 367 56.4
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.4e-105 385.6 334 59.9
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 5.8e-105 385.2 358 56.4
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 7.5e-105 384.8 358 55.6
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 9.9e-105 384.4 404 53.0
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 1.3e-104 384.0 354 53.7
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 3.7e-104 382.5 365 55.6
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 3.7e-104 382.5 364 56.0
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 1.2e-102 377.5 371 55.0
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 3.5e-102 375.9 360 55.6
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 3.5e-102 375.9 365 56.2
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 6.6e-101 371.7 374 54.8
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.1e-100 370.9 453 46.1
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 8.1e-99 364.8 369 53.4
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 8.1e-99 364.8 312 60.9
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 9.2e-95 351.3 313 59.7
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 2.1e-94 350.1 432 46.3
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 2.0e-89 333.6 416 46.6
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 7.6e-89 331.6 230 71.7
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 3.5e-86 322.8 382 49.2
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 1.0e-85 321.2 305 55.4
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 1.7e-85 320.5 251 64.1
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.4e-82 310.8 424 43.2
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 3.1e-82 309.7 292 55.1
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 3.4e-81 306.2 307 52.8
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 5.4e-79 298.9 341 50.4
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 1.8e-77 293.9 209 67.9
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 1.9e-76 290.4 379 44.9
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 3.5e-70 269.6 171 73.7
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 3.1e-66 256.5 173 72.3
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 1.2e-65 254.6 351 43.6
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 8.4e-64 248.4 338 41.4
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 1.3e-61 241.1 146 78.1
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 1.5e-60 237.7 188 59.6
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 1.5e-60 237.7 328 44.5
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 3.7e-59 233.0 299 44.5
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 6.3e-59 232.3 144 73.6
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 3.3e-52 209.9 135 74.1
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 1.1e-44 184.9 116 73.3
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 4.8e-43 179.5 226 46.5
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 3.1e-42 176.8 199 44.2
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 6.7e-37 159.1 203 46.8
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 1.0e-29 135.2 186 38.2
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 2.0e-28 131.0 185 38.4
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 4.8e-27 126.3 93 68.8
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 1.2e-25 121.7 129 52.7
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 3.8e-24 116.7 121 46.3
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 1.6e-22 111.3 203 34.5
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 4.4e-20 103.2 91 57.1
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 4.4e-20 103.2 65 73.8
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 7.5e-20 102.4 89 56.2
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 2.8e-19 100.5 84 56.0
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 1.8e-18 97.8 111 50.5
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 5.4e-18 96.3 70 65.7
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 3.5e-17 93.6 87 52.9
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 3.8e-16 90.1 182 31.9
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 5.0e-16 89.7 81 55.6
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 6.6e-16 89.4 83 50.6
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 6.6e-16 89.4 80 50.0
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 6.1e-14 82.8 92 48.9
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 8.0e-14 82.4 81 53.1
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 3.0e-13 80.5 132 39.4
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 3.4e-12 77.0 209 33.5
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 9.8e-12 75.5 86 47.7
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.3e-11 75.1 88 47.7
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 1.7e-11 74.7 44 75.0
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 8.3e-11 72.4 63 57.1
FvH4_4g05840 Fragaria vesca HOM05D005043 ORTHO05D006182 2.4e-10 70.9 160 30.0
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 3.2e-10 70.5 36 86.1
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 3.2e-10 70.5 57 50.9
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 2.5e-07 60.8 58 46.6
PSO063G1607 Papaver somniferum HOM05D001448 ORTHO05D005781 7.3e-07 59.3 90 36.7
CBR_g1120 Chara braunii HOM05D001448 ORTHO05D005781 1.2e-06 58.5 81 39.5
PSO017G5465 Papaver somniferum HOM05D001448 ORTHO05D005781 1.2e-06 58.5 111 30.6
Eucgr.K03285 Eucalyptus grandis HOM05D001448 ORTHO05D005781 2.8e-06 57.4 85 35.3
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 3.6e-06 57.0 33 75.8
Zm00001eb094840 Zea mays HOM05D001448 ORTHO05D005781 6.1e-06 56.2 139 29.5
SEGI_22534 Sequoiadendron giganteum HOM05D001448 ORTHO05D005781 8.0e-06 55.8 152 27.6
Sc24g0003080 Simmondsia chinensis HOM05D001448 ORTHO05D005781 8.0e-06 55.8 79 35.4


User provided reference genes

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