Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G34.11 Capsicum annuum HOM05D004387 ORTHO05D005218 9.6e-59 229.9 116 100.0
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 4.2e-14 81.6 61 70.5
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 4.2e-14 81.6 61 70.5
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 5.5e-14 81.3 61 70.5
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 5.5e-14 81.3 61 70.5
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 5.5e-14 81.3 61 70.5
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 1.2e-13 80.1 52 78.8
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 1.2e-13 80.1 61 68.9
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.2e-13 80.1 61 68.9
Cc06_g17110 Coffea canephora HOM05D004387 ORTHO05D005218 1.6e-13 79.7 52 76.9
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.6e-13 79.7 61 68.9
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 3.6e-13 78.6 52 75.0
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 4.7e-13 78.2 52 75.0
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 4.7e-13 78.2 61 65.6
Hma1.2p1_0953F.1_g241060 Hydrangea macrophylla HOM05D004387 ORTHO05D005218 4.7e-13 78.2 52 75.0
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 8.0e-13 77.4 52 75.0
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 1.0e-12 77.0 60 66.7
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.0e-12 77.0 52 71.2
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 1.0e-12 77.0 52 73.1
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 1.0e-12 77.0 52 75.0
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.4e-12 76.6 52 75.0
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 1.4e-12 76.6 70 57.1
Sc13g0001760 Simmondsia chinensis HOM05D004387 ORTHO05D005218 1.4e-12 76.6 52 71.2
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 1.4e-12 76.6 117 43.6
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 1.4e-12 76.6 52 73.1
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 1.8e-12 76.3 52 73.1
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 1.8e-12 76.3 61 65.6
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 2.3e-12 75.9 52 71.2
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 2.3e-12 75.9 52 73.1
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 2.3e-12 75.9 52 71.2
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 2.3e-12 75.9 61 65.6
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 2.3e-12 75.9 52 73.1
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 2.3e-12 75.9 52 71.2
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 3.0e-12 75.5 52 71.2
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 3.0e-12 75.5 61 63.9
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 3.0e-12 75.5 51 72.5
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 3.0e-12 75.5 52 73.1
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.0e-12 75.5 52 71.2
Eucgr.A00263 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.0e-12 75.5 52 71.2
Solyc10g080130.3 Solanum lycopersicum HOM05D004387 ORTHO05D005218 3.0e-12 75.5 61 65.6
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 4.0e-12 75.1 52 71.2
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 4.0e-12 75.1 52 71.2
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 5.2e-12 74.7 83 49.4
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 5.2e-12 74.7 51 72.5
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 5.2e-12 74.7 61 65.6
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 6.8e-12 74.3 52 67.3
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 6.8e-12 74.3 52 67.3
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 8.8e-12 73.9 52 67.3
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 8.8e-12 73.9 52 71.2
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 8.8e-12 73.9 52 67.3
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 1.2e-11 73.6 52 69.2
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 1.2e-11 73.6 51 72.5
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 1.5e-11 73.2 61 62.3
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 1.5e-11 73.2 61 62.3
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 1.5e-11 73.2 52 69.2
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.5e-11 73.2 52 71.2
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.5e-11 73.2 52 71.2
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.5e-11 73.2 52 71.2
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 1.5e-11 73.2 52 71.2
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 1.5e-11 73.2 52 69.2
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 1.5e-11 73.2 52 67.3
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 1.5e-11 73.2 52 71.2
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 1.5e-11 73.2 61 62.3
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.0e-11 72.8 52 71.2
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 2.0e-11 72.8 61 62.3
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 2.0e-11 72.8 51 68.6
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 2.0e-11 72.8 52 69.2
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 2.6e-11 72.4 55 65.5
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 2.6e-11 72.4 52 67.3
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 3.4e-11 72.0 61 60.7
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.4e-11 72.0 52 67.3
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 3.4e-11 72.0 52 65.4
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 3.4e-11 72.0 52 65.4
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 3.4e-11 72.0 52 67.3
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 4.4e-11 71.6 52 67.3
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 4.4e-11 71.6 60 61.7
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 4.4e-11 71.6 52 67.3
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 4.4e-11 71.6 52 67.3
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 4.4e-11 71.6 52 67.3
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 4.4e-11 71.6 52 67.3
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 5.7e-11 71.2 110 44.5
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 5.7e-11 71.2 52 67.3
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 5.7e-11 71.2 52 67.3
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 5.7e-11 71.2 52 67.3
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 7.5e-11 70.9 52 69.2
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 9.8e-11 70.5 52 65.4
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 9.8e-11 70.5 61 59.0
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 1.3e-10 70.1 61 60.7
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 1.3e-10 70.1 51 64.7
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 1.3e-10 70.1 101 44.6
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 1.3e-10 70.1 61 60.7
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 1.7e-10 69.7 51 66.7
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 2.2e-10 69.3 53 69.8
CSS0046204 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.8e-10 68.9 52 65.4
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 2.8e-10 68.9 61 59.0
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 2.8e-10 68.9 61 59.0
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 2.8e-10 68.9 52 63.5
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 3.7e-10 68.6 60 58.3
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 3.7e-10 68.6 52 67.3
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 4.8e-10 68.2 60 58.3
Gohir.D01G008666 Gossypium hirsutum HOM05D004387 ORTHO05D005218 4.8e-10 68.2 54 68.5
unitig_46.g18443 Utricularia gibba HOM05D004387 ORTHO05D005218 4.8e-10 68.2 53 64.2
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 8.3e-10 67.4 123 39.8
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 8.3e-10 67.4 123 39.8
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 8.3e-10 67.4 123 39.8
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 8.3e-10 67.4 123 39.8
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 8.3e-10 67.4 123 39.8
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 8.3e-10 67.4 60 56.7
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 1.1e-09 67.0 123 39.8
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 1.1e-09 67.0 61 57.4
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 1.1e-09 67.0 123 39.8
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 1.4e-09 66.6 61 55.7
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 1.8e-09 66.2 123 39.0
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 2.4e-09 65.9 51 64.7
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 4.1e-09 65.1 51 60.8
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 4.1e-09 65.1 62 56.5
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 5.4e-09 64.7 45 73.3
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 1.6e-08 63.2 51 62.7
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 2.0e-08 62.8 70 47.1
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 2.7e-08 62.4 60 56.7
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 4.5e-08 61.6 43 65.1
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 7.7e-08 60.8 57 52.6
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 3.8e-07 58.5 50 62.0
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 3.3e-06 55.5 48 52.1
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 3.3e-06 55.5 33 78.8
ClCG04G000130 Citrullus lanatus HOM05D004387 ORTHO05D005218 4.2e-06 55.1 36 72.2
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 5.5e-06 54.7 42 64.3


User provided reference genes

Program Settings