Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 1.5e-262 909.1 489 100.0
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 7.5e-230 800.4 487 87.9
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 1.7e-229 799.3 491 87.6
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 4.6e-227 791.2 491 86.8
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 3.9e-194 681.8 494 76.9
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 1.1e-191 673.7 471 79.4
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 4.5e-134 482.3 276 87.0
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 2.7e-110 403.3 475 52.8
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 3.5e-110 402.9 392 57.4
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 1.4e-106 391.0 466 53.0
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 2.9e-104 383.3 464 53.9
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 6.4e-104 382.1 453 50.6
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 2.4e-103 380.2 473 50.5
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 3.2e-103 379.8 473 50.5
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 4.1e-103 379.4 463 53.3
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 2.1e-102 377.1 470 51.3
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 6.0e-102 375.6 478 49.0
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 1.3e-101 374.4 456 51.8
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 1.7e-101 374.0 498 48.8
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 5.1e-101 372.5 469 53.3
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 1.1e-100 371.3 469 49.7
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 1.6e-99 367.5 472 50.2
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 2.8e-99 366.7 515 47.8
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 4.7e-99 365.9 469 49.7
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 2.4e-98 363.6 470 49.8
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 4.0e-98 362.8 472 51.3
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 8.9e-98 361.7 482 51.2
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.5e-97 360.9 468 48.9
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 2.0e-97 360.5 472 50.2
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 5.8e-97 359.0 496 48.0
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 4.9e-96 355.9 490 50.4
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 6.4e-96 355.5 377 51.5
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 1.1e-95 354.8 503 46.1
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 2.7e-94 350.1 400 49.5
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 7.8e-94 348.6 386 51.3
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 5.1e-93 345.9 480 50.0
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 4.3e-92 342.8 471 48.6
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 3.6e-91 339.7 470 47.7
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 3.6e-91 339.7 387 49.6
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 3.6e-91 339.7 466 50.6
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 1.1e-90 338.2 467 48.8
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 2.4e-90 337.0 473 50.1
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 5.3e-90 335.9 469 47.3
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 9.0e-90 335.1 473 47.8
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 2.0e-89 334.0 465 47.7
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 5.8e-89 332.4 360 51.4
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 9.9e-89 331.6 549 42.4
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 9.9e-89 331.6 376 49.5
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 1.7e-88 330.9 360 49.2
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 4.9e-88 329.3 387 48.1
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 1.1e-87 328.2 472 43.4
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 7.9e-86 322.0 469 45.4
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 1.7e-85 320.9 498 47.6
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 2.3e-85 320.5 484 42.6
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 1.1e-84 318.2 483 48.0
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 1.1e-84 318.2 389 47.6
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 1.5e-84 317.8 524 42.6
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 7.4e-84 315.5 298 54.7
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 9.6e-84 315.1 510 44.5
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 1.3e-83 314.7 386 49.0
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 1.3e-83 314.7 389 48.8
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 2.8e-83 313.5 462 48.9
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 8.1e-83 312.0 528 42.2
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 1.8e-82 310.8 465 46.5
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 2.2e-80 303.9 526 42.2
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 2.2e-80 303.9 470 46.0
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 2.4e-79 300.4 413 45.0
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 5.5e-79 299.3 494 46.8
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 2.7e-78 297.0 383 46.7
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 2.7e-78 297.0 383 46.7
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 6.0e-78 295.8 511 37.8
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 1.9e-76 290.8 437 46.5
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 5.6e-76 289.3 391 45.5
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 4.8e-75 286.2 497 42.3
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 1.1e-74 285.0 378 44.4
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 6.9e-74 282.3 473 45.2
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 4.2e-71 273.1 531 40.9
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 2.7e-70 270.4 373 43.4
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 1.9e-68 264.2 340 51.8
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 3.3e-68 263.5 262 52.3
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 8.2e-67 258.8 468 39.7
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 3.1e-66 256.9 364 42.6
CAN.G12.29 Capsicum annuum HOM05D001989 ORTHO05D000346 5.3e-66 256.1 151 86.1
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 3.2e-63 246.9 469 36.7
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 7.9e-62 242.3 275 49.1
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.5e-60 238.0 468 40.8
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 1.6e-59 234.6 499 40.1
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 4.5e-57 226.5 473 39.5
Nitab4.5_0022301g0010 Nicotiana tabacum HOM05D007081 ORTHO05D008834 5.5e-55 219.5 191 73.3
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 2.0e-52 211.1 316 47.5
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 8.2e-51 205.7 466 36.1
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.2e-48 197.6 324 39.5
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 2.9e-48 197.2 487 32.2
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 6.5e-48 196.1 256 45.3
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 1.2e-46 191.8 386 34.7
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 6.1e-46 189.5 278 52.2
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 7.4e-44 182.6 355 36.9
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 4.1e-42 176.8 186 53.2
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 2.6e-41 174.1 311 35.7
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 1.2e-38 165.2 208 46.6
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 8.0e-38 162.5 320 41.2
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 5.7e-28 129.8 150 47.3
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 4.8e-27 126.7 109 61.5
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 4.5e-25 120.2 403 26.8
CAN.G43.8 Capsicum annuum HOM05D000484 ORTHO05D008834 5.0e-24 116.7 71 78.9
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.8e-22 110.9 101 57.4
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 4.7e-22 110.2 144 43.8
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 2.3e-21 107.8 98 53.1
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 3.8e-16 90.5 66 66.7
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 3.2e-10 70.9 89 50.6
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 2.0e-09 68.2 69 53.6
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 3.0e-08 64.3 165 29.7
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 6.6e-08 63.2 121 33.1
Hund21526 Selenicereus undatus HOM05D005384 ORTHO05D006477 6.6e-08 63.2 125 34.4
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.1e-07 62.4 136 31.6
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 1.5e-07 62.0 121 33.1
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 1.9e-07 61.6 139 30.9
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 1.9e-07 61.6 139 30.9
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 4.3e-07 60.5 181 29.8
Thhalv10010093m.g Eutrema salsugineum HOM05D005384 ORTHO05D006477 4.3e-07 60.5 131 31.3
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 5.6e-07 60.1 127 34.6
Lj2A247G82 Lonicera japonica HOM05D005384 ORTHO05D006477 5.6e-07 60.1 205 29.3
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 7.3e-07 59.7 160 30.6
Mapoly0005s0121 Marchantia polymorpha HOM05D005384 ORTHO05D006477 7.3e-07 59.7 130 33.8
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 9.5e-07 59.3 150 32.0
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 9.5e-07 59.3 116 34.5
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 9.5e-07 59.3 120 35.0
CiPaw.04G049200 Carya illinoinensis HOM05D005384 ORTHO05D006477 1.2e-06 58.9 126 34.1
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.2e-06 58.9 120 35.0
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 1.6e-06 58.5 184 26.6
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 1.6e-06 58.5 120 35.0
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 1.6e-06 58.5 155 31.6
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 1.6e-06 58.5 130 31.5
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 2.1e-06 58.2 211 25.1
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 2.1e-06 58.2 129 31.8
Lj3C397G6 Lonicera japonica HOM05D005384 ORTHO05D006477 2.1e-06 58.2 203 27.6
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 2.1e-06 58.2 114 36.8
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 2.8e-06 57.8 106 38.7
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 2.8e-06 57.8 123 33.3
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 3.6e-06 57.4 124 30.6
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 3.6e-06 57.4 160 30.6
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 3.6e-06 57.4 153 29.4
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 4.7e-06 57.0 107 35.5
Sp5g08170 Schrenkiella parvula HOM05D005384 ORTHO05D006477 4.7e-06 57.0 137 29.9
Actinidia10880 Actinidia chinensis HOM05D005384 ORTHO05D006477 8.0e-06 56.2 197 27.9
EL10Ac8g19736 Beta vulgaris HOM05D005384 ORTHO05D006477 8.0e-06 56.2 135 30.4


User provided reference genes

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