Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 1.1e-143 513.5 287 100.0
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 8.3e-128 460.7 287 90.6
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.5e-124 449.9 292 81.5
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 9.8e-121 437.2 289 86.2
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 3.2e-119 432.2 289 85.1
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 3.9e-109 398.7 289 77.5
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 6.9e-98 361.3 289 72.7
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 9.9e-97 357.5 289 63.7
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 1.3e-96 357.1 287 70.0
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 2.9e-96 355.9 247 70.4
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.4e-96 354.8 293 62.5
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.4e-96 354.4 293 62.1
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-95 354.0 293 62.8
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 1.4e-95 353.6 287 63.8
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.9e-95 353.2 235 72.8
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.9e-95 353.2 247 70.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 3.2e-95 352.4 285 67.7
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 6.0e-94 348.2 247 68.8
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 6.0e-94 348.2 247 68.8
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 1.0e-93 347.4 245 67.8
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.7e-93 346.7 292 61.3
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.7e-93 346.7 291 63.2
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.3e-93 346.3 292 61.0
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 3.9e-93 345.5 293 61.1
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.9e-92 343.2 293 60.8
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 5.6e-92 341.7 247 68.4
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 9.6e-92 340.9 293 62.1
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 9.6e-92 340.9 293 62.1
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 3.6e-91 339.0 290 61.7
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 4.8e-91 338.6 292 60.6
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 8.1e-91 337.8 289 61.6
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 8.1e-91 337.8 291 59.5
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 3.1e-90 335.9 287 59.9
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 5.3e-90 335.1 287 60.6
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 5.3e-90 335.1 300 69.0
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 6.9e-90 334.7 290 59.0
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 9.0e-90 334.3 285 61.4
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 1.2e-89 334.0 247 67.6
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.5e-89 333.6 285 61.8
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 4.5e-89 332.0 248 65.7
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 4.5e-89 332.0 289 66.1
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 4.5e-89 332.0 247 67.2
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 5.8e-89 331.6 287 59.9
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 2.9e-88 329.3 247 65.2
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 6.4e-88 328.2 291 64.9
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.4e-87 327.0 247 66.8
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 1.4e-87 327.0 272 62.1
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.4e-87 326.2 287 58.9
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 3.2e-87 325.9 250 65.6
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 4.2e-87 325.5 294 59.2
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 4.2e-87 325.5 294 59.2
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 9.3e-87 324.3 294 58.8
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.6e-86 323.6 294 58.8
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.6e-86 323.6 234 68.4
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 2.1e-86 323.2 295 59.0
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 3.5e-86 322.4 294 58.5
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 3.5e-86 322.4 247 64.0
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 3.5e-86 322.4 285 59.6
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.6e-86 322.0 274 61.7
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.3e-85 320.5 294 59.2
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 1.8e-85 320.1 294 58.8
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.3e-85 319.7 286 64.0
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.0e-85 319.3 248 64.5
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 6.7e-85 318.2 297 57.2
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 8.7e-85 317.8 272 59.9
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.1e-84 317.4 248 63.7
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.5e-84 317.0 285 58.6
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.9e-84 316.6 290 55.9
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.9e-84 316.6 298 57.7
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.9e-84 316.6 285 57.9
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 3.3e-84 315.8 232 67.2
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 3.3e-84 315.8 260 62.3
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 4.3e-84 315.5 264 62.1
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 9.6e-84 314.3 344 50.6
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 9.6e-84 314.3 297 58.2
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.3e-83 313.9 289 55.4
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 1.6e-83 313.5 285 56.8
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 2.1e-83 313.2 295 57.3
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.7e-83 312.4 262 63.4
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 4.8e-83 312.0 285 56.5
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.1e-82 309.3 284 55.6
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 4.0e-82 308.9 274 60.9
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 5.3e-82 308.5 288 54.5
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 6.9e-82 308.1 285 56.1
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.5e-81 307.0 235 64.7
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.0e-81 306.6 222 68.5
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 3.4e-81 305.8 284 56.7
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 3.4e-81 305.8 208 71.2
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 9.9e-81 304.3 234 61.5
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.9e-80 302.8 260 60.4
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 4.9e-80 302.0 285 56.1
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.4e-79 300.4 229 65.9
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.9e-79 300.1 259 59.5
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 6.7e-77 291.6 326 50.0
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 9.6e-76 287.7 245 56.7
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.3e-75 287.3 277 57.4
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.6e-75 287.0 288 52.1
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.6e-75 287.0 282 52.1
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 3.1e-74 282.7 216 63.0
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 9.0e-74 281.2 200 81.0
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.8e-72 275.8 209 62.2
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 6.5e-72 275.0 238 60.1
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 9.3e-71 271.2 220 63.6
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.6e-70 270.4 214 60.3
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.5e-68 263.8 235 57.9
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.8e-67 259.6 219 63.5
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 2.6e-65 253.1 179 68.7
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 3.2e-63 246.1 246 54.1
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 4.6e-62 242.3 278 48.9
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 6.7e-61 238.4 122 94.3
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-55 221.1 188 63.3
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 4.2e-55 219.2 199 56.8
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 9.4e-55 218.0 192 55.2
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.6e-54 217.2 149 73.2
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 6.7e-53 211.8 219 53.0
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 8.8e-53 211.5 157 66.2
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 5.7e-52 208.8 182 59.3
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.8e-51 206.5 202 62.9
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 2.0e-49 200.3 243 42.0
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.2e-48 196.8 247 42.9
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 2.2e-48 196.8 220 47.7
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.5e-44 184.1 297 39.1
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.4e-42 176.8 240 45.0
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 5.3e-42 175.6 128 64.8
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.3e-40 171.0 284 40.5
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 2.2e-40 170.2 167 50.3
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 3.8e-40 169.5 170 54.1
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 4.0e-37 159.5 116 62.9
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 8.8e-37 158.3 109 68.8
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 9.7e-36 154.8 118 63.6
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 3.5e-33 146.4 284 34.9
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.4e-28 129.4 98 63.3
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 7.5e-28 128.6 158 45.6
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.6e-25 120.9 86 66.3
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.7e-24 117.5 140 48.6
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 8.6e-16 88.6 220 29.5
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.1e-15 88.2 135 40.7
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 5.6e-15 85.9 247 25.9
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 2.8e-06 57.0 83 68.7


User provided reference genes

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