Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 3.2e-243 844.7 450 100.0
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.3e-231 806.2 451 95.1
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 4.8e-231 804.3 451 93.8
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 2.6e-216 755.4 423 93.1
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 3.8e-212 741.5 441 89.3
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 8.2e-207 723.8 419 90.2
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.6e-192 675.6 463 76.5
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.1e-190 670.2 448 77.7
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.8e-190 669.5 454 78.0
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 1.1e-187 660.2 452 77.0
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.5e-187 659.8 451 78.0
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.9e-187 659.4 455 77.4
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 4.3e-187 658.3 454 77.8
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 9.5e-187 657.1 453 77.0
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.6e-186 656.4 449 75.7
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.6e-186 656.4 450 78.2
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.8e-186 655.6 449 78.4
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 8.9e-185 650.6 455 78.2
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 4.4e-184 648.3 448 75.4
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.3e-183 646.7 455 76.0
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.9e-183 645.6 450 76.9
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 5.4e-182 641.3 455 75.6
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 5.4e-182 641.3 449 75.9
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 7.0e-182 641.0 449 76.2
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.6e-181 639.8 461 75.7
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 4.6e-181 638.3 450 76.7
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.5e-179 633.3 450 76.2
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.9e-179 632.9 449 74.6
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.3e-179 632.1 450 75.8
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.3e-179 631.7 455 74.3
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.7e-178 628.2 458 74.7
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 8.0e-178 627.5 452 73.5
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 8.0e-178 627.5 449 73.1
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 2.3e-177 625.9 490 70.4
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 3.1e-177 625.5 449 73.7
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.8e-177 624.4 450 73.3
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.2e-176 623.6 449 74.4
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 2.6e-176 622.5 450 73.8
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.7e-175 619.8 376 87.2
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.9e-175 619.0 446 74.9
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 2.4e-174 615.9 453 74.2
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 7.8e-173 610.9 448 73.9
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.7e-172 609.8 454 71.8
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.0e-172 609.0 450 72.7
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.5e-171 606.7 416 77.6
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 3.6e-170 602.1 448 72.3
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 3.6e-170 602.1 450 74.2
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.7e-170 601.7 448 72.3
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 8.1e-170 600.9 449 71.9
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 1.4e-169 600.1 455 73.8
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 2.6e-168 595.9 450 72.4
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.4e-168 595.5 447 71.6
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 5.8e-168 594.7 454 70.5
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.3e-167 593.6 447 71.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.7e-167 593.2 446 72.9
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 2.2e-167 592.8 453 72.4
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 8.3e-167 590.9 450 72.2
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.1e-166 590.5 452 71.5
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.9e-166 589.7 446 71.1
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 9.2e-166 587.4 447 70.7
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.2e-165 587.0 450 70.9
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.6e-165 586.6 452 68.1
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 2.7e-165 585.9 429 73.2
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 6.0e-165 584.7 460 69.6
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 3.0e-164 582.4 448 70.8
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 3.9e-164 582.0 445 73.5
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 6.6e-164 581.3 457 69.4
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.1e-163 580.5 449 69.7
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 2.5e-163 579.3 445 73.0
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 4.7e-162 575.1 454 67.2
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 6.2e-162 574.7 466 67.8
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 1.1e-161 573.9 451 69.8
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.8e-161 573.2 447 70.5
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 2.6e-160 569.3 452 66.8
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 2.6e-160 569.3 452 68.8
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 7.6e-160 567.8 447 69.8
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 9.9e-160 567.4 448 69.0
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 1.3e-159 567.0 451 68.1
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 3.8e-159 565.5 465 68.0
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 4.9e-159 565.1 447 69.6
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 6.4e-159 564.7 451 70.5
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 6.4e-159 564.7 451 67.4
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 6.4e-159 564.7 448 68.1
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.9e-158 563.1 451 68.3
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.9e-158 563.1 447 68.2
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 2.4e-158 562.8 393 74.8
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 3.2e-158 562.4 451 68.1
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 3.2e-158 562.4 411 72.3
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 9.2e-158 560.8 502 64.9
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 1.2e-157 560.5 461 68.3
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.6e-157 560.1 448 68.8
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 2.7e-157 559.3 453 68.9
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 3.5e-157 558.9 451 67.4
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 4.6e-157 558.5 453 67.8
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.1e-155 553.9 453 67.5
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.1e-155 553.9 448 67.0
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 4.3e-155 552.0 448 66.7
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 9.6e-155 550.8 448 66.5
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 9.6e-155 550.8 451 66.5
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.2e-154 550.4 454 67.0
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 2.8e-154 549.3 448 66.1
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 8.1e-154 547.7 451 66.5
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 2.4e-153 546.2 454 66.7
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 5.3e-153 545.0 454 66.5
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.2e-152 543.9 451 66.3
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 4.9e-151 538.5 448 65.0
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 4.2e-150 535.4 478 62.1
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 7.1e-150 534.6 451 65.4
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 9.3e-150 534.3 454 64.3
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.6e-149 533.5 477 62.9
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 9.6e-147 524.2 458 66.4
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 8.4e-143 511.1 450 64.7
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.4e-142 510.4 415 66.7
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.3e-138 497.3 424 64.2
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 3.4e-136 489.2 426 63.6
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 3.8e-135 485.7 393 66.7
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 6.0e-133 478.4 413 64.4
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 3.0e-132 476.1 462 57.4
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 1.1e-129 467.6 396 64.1
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.0e-128 463.4 507 54.4
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 4.3e-123 445.7 476 56.5
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 5.3e-121 438.7 426 59.9
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 3.4e-120 436.0 449 57.7
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 5.9e-120 435.3 341 68.3
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.4e-116 424.1 497 48.5
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 5.7e-115 418.7 478 50.6
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.8e-113 413.7 341 65.1
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 8.8e-108 394.8 452 51.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.0e-103 381.3 484 46.7
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.0e-100 371.3 454 50.9
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 5.0e-95 352.4 238 72.3
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 8.5e-95 351.7 400 53.2
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 2.2e-87 327.0 339 55.5
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 3.2e-86 323.2 483 44.7
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.4e-81 307.8 374 51.3
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 1.8e-81 307.4 557 37.7
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 7.5e-75 285.4 520 36.9
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.4e-73 280.4 392 42.3
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 6.4e-58 229.2 174 66.7
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 6.4e-58 229.2 252 58.7
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 3.5e-56 223.4 128 82.0
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 3.0e-55 220.3 402 37.1
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 4.3e-54 216.5 178 62.4
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 9.5e-54 215.3 179 62.0
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 1.3e-50 204.9 172 61.0
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.2e-49 200.3 392 37.8
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 4.1e-49 199.9 259 48.6
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 7.3e-46 189.1 253 47.8
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.2e-43 181.8 264 40.5
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.2e-32 145.2 141 51.1
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 6.0e-32 142.9 349 32.1
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 7.8e-32 142.5 134 67.9
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 2.3e-31 141.0 119 59.7
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 6.2e-29 132.9 226 40.7
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 1.2e-24 118.6 164 52.4
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 1.6e-24 118.2 160 52.5
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.3e-23 115.2 140 55.0
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 2.3e-23 114.4 172 42.4
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 2.3e-23 114.4 92 59.8
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 4.8e-21 106.7 80 72.5
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.2e-18 97.8 169 43.8
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 7.1e-17 92.8 300 26.0
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.3e-15 88.6 99 46.5
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 1.1e-14 85.5 200 35.0
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 4.3e-14 83.6 54 75.9
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 2.4e-12 77.8 120 47.5
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.9e-09 68.2 43 81.4
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.7e-08 64.3 42 81.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 3.5e-08 63.9 109 36.7
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 2.3e-07 61.2 42 71.4
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 5.1e-07 60.1 40 77.5
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.1e-06 58.9 32 90.6
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 4.3e-06 57.0 50 60.0


User provided reference genes

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