Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 2.7e-233 812.4 682 100.0
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 6.9e-205 718.0 679 93.8
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 9.3e-202 707.6 679 92.9
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 3.3e-199 699.1 679 92.8
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 6.9e-181 638.3 690 86.8
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 7.1e-178 628.2 719 71.1
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 7.9e-177 624.8 676 87.7
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 3.3e-106 390.2 613 77.3
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 1.4e-104 384.8 681 73.0
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.0e-104 383.3 675 72.4
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 1.1e-101 375.2 672 71.9
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 1.9e-101 374.4 673 72.1
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 9.2e-101 372.1 667 71.8
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 6.0e-100 369.4 677 71.0
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 2.5e-98 364.0 659 71.9
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 3.6e-97 360.1 685 70.5
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.2e-97 359.4 677 69.6
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.2e-97 359.4 679 70.0
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 1.4e-96 358.2 679 69.8
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 1.8e-96 357.8 681 69.9
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 5.2e-96 356.3 575 78.6
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 3.4e-95 353.6 658 71.7
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 4.9e-94 349.7 685 68.6
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 6.4e-94 349.4 653 72.4
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 6.0e-92 342.8 660 71.5
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.0e-91 342.0 677 69.3
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 2.3e-91 340.9 725 45.4
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 5.1e-91 339.7 668 70.7
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 8.7e-91 339.0 614 73.6
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 1.1e-90 338.6 674 70.0
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 1.5e-90 338.2 667 69.9
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 2.5e-90 337.4 663 70.3
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 1.1e-88 332.0 674 69.9
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 1.4e-88 331.6 674 68.5
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 2.4e-88 330.9 596 64.9
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 5.3e-88 329.7 677 68.2
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 9.0e-88 328.9 674 68.4
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 2.0e-87 327.8 678 69.2
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 2.6e-87 327.4 689 68.4
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 3.4e-87 327.0 587 73.8
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 4.4e-87 326.6 684 67.3
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 1.4e-85 321.6 671 68.7
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 4.2e-85 320.1 667 68.7
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 1.2e-84 318.5 673 68.5
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 1.6e-84 318.2 543 78.1
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 3.5e-84 317.0 668 68.7
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 3.5e-84 317.0 653 69.2
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 4.6e-84 316.6 664 69.4
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 7.9e-84 315.8 655 68.5
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 8.7e-83 312.4 514 82.3
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 2.5e-82 310.8 655 70.4
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 4.3e-82 310.1 580 74.8
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 4.3e-82 310.1 580 74.8
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 1.3e-81 308.5 580 74.7
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.3e-81 308.5 514 81.9
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 2.1e-81 307.8 667 66.7
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 3.6e-81 307.0 581 74.4
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 3.6e-81 307.0 581 74.4
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 3.6e-81 307.0 534 79.4
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 3.6e-81 307.0 679 66.4
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 3.6e-81 307.0 662 68.3
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 8.1e-81 305.8 617 73.3
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 1.1e-80 305.4 534 77.3
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 1.1e-80 305.4 677 67.2
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 1.4e-80 305.1 581 73.8
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 3.1e-80 303.9 678 66.2
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 3.1e-80 303.9 665 66.9
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 9.0e-80 302.4 667 66.6
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 1.2e-79 302.0 565 75.4
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 2.0e-79 301.2 665 68.0
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 2.6e-79 300.8 654 67.7
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 2.6e-79 300.8 682 65.4
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 5.8e-79 299.7 675 68.0
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 5.8e-79 299.7 654 67.6
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 9.9e-79 298.9 693 65.5
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 1.3e-78 298.5 678 66.5
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 1.9e-77 294.7 667 66.7
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 7.9e-76 289.3 672 65.9
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.0e-75 288.9 673 66.3
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 3.9e-75 287.0 668 65.9
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 5.1e-75 286.6 677 66.3
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 8.7e-75 285.8 667 66.6
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 1.1e-74 285.4 591 39.1
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 2.5e-74 284.3 537 76.4
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 6.9e-72 276.2 604 71.0
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 1.2e-71 275.4 641 56.3
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 2.6e-71 274.2 519 77.6
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 2.9e-70 270.8 675 65.5
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 5.5e-69 266.5 525 76.0
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 3.5e-68 263.8 622 67.7
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 1.8e-67 261.5 668 59.6
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 8.7e-67 259.2 506 73.7
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 5.3e-64 250.0 278 55.4
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 5.3e-64 250.0 700 58.0
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 5.0e-62 243.4 287 52.3
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 1.5e-55 221.9 297 50.5
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 4.5e-55 220.3 276 50.7
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 3.7e-49 200.7 139 65.5
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 2.7e-44 184.5 516 71.1
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 5.9e-39 166.8 191 61.3
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 2.7e-36 157.9 110 66.4
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 1.5e-34 152.1 168 49.4
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 2.8e-33 147.9 246 41.9
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 1.6e-31 142.1 116 57.8
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.0e-31 141.7 199 47.2
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 2.0e-31 141.7 110 62.7
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 3.6e-28 131.0 173 40.5
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.0e-27 127.9 80 78.8
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.4e-26 124.4 80 76.2
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 9.8e-26 122.9 112 58.9
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.6e-20 105.5 211 43.1
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 2.1e-20 105.1 105 59.0
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 3.6e-20 104.4 136 42.6
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 4.7e-20 104.0 259 38.2
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 4.9e-17 94.0 117 41.9
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 4.3e-13 80.9 114 36.0
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 7.3e-13 80.1 74 89.2


User provided reference genes

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