Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 9.7e-68 260.0 129 100.0
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.4e-45 186.4 107 85.0
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 2.0e-44 182.6 107 84.1
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 7.5e-44 180.6 104 84.6
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 9.7e-44 180.3 107 83.2
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 6.3e-43 177.6 107 82.2
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 3.2e-39 165.2 95 85.3
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 1.7e-35 152.9 107 69.2
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.7e-35 152.9 107 69.2
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 2.4e-34 149.1 107 68.2
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 9.1e-34 147.1 104 70.2
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 3.5e-33 145.2 101 69.3
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.0e-32 143.7 101 70.3
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.0e-32 143.7 92 71.7
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 1.7e-32 142.9 107 66.4
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.9e-32 142.1 106 65.1
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 3.8e-32 141.7 101 71.3
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.5e-32 141.0 103 68.9
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 6.5e-32 141.0 94 73.4
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.1e-31 140.2 101 65.3
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 1.1e-31 140.2 86 76.7
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.9e-31 139.4 104 67.3
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 1.9e-31 139.4 104 60.6
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.9e-31 139.4 94 70.2
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.5e-31 139.0 95 73.7
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.5e-31 139.0 107 65.4
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 3.2e-31 138.7 81 81.5
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 3.2e-31 138.7 104 65.4
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 7.2e-31 137.5 83 79.5
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 7.2e-31 137.5 96 67.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.5e-31 137.1 84 78.6
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 9.5e-31 137.1 104 62.5
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 9.5e-31 137.1 87 74.7
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 1.6e-30 136.3 106 61.3
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.6e-30 136.3 84 77.4
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.8e-30 135.6 99 67.7
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 2.8e-30 135.6 77 81.8
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 2.8e-30 135.6 99 67.7
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 3.6e-30 135.2 107 64.5
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.7e-30 134.8 84 76.2
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 4.7e-30 134.8 92 69.6
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 6.1e-30 134.4 104 64.4
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 6.1e-30 134.4 104 64.4
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 8.0e-30 134.0 82 78.0
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 8.0e-30 134.0 96 66.7
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.0e-29 133.7 102 65.7
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.0e-29 133.7 84 76.2
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.0e-29 133.7 77 77.9
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.0e-29 133.7 105 63.8
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.8e-29 132.9 79 77.2
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.8e-29 132.9 99 66.7
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.3e-29 132.5 101 62.4
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 2.3e-29 132.5 86 74.4
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.3e-29 132.5 101 65.3
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 3.0e-29 132.1 101 65.3
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.0e-29 132.1 99 66.7
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 4.0e-29 131.7 81 76.5
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 4.0e-29 131.7 101 62.4
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 8.8e-29 130.6 98 63.3
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 8.8e-29 130.6 78 79.5
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 8.8e-29 130.6 103 66.0
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 8.8e-29 130.6 97 68.0
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 8.8e-29 130.6 105 62.9
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 8.8e-29 130.6 100 65.0
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.2e-28 130.2 104 64.4
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.5e-28 129.8 104 64.4
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.5e-28 129.8 79 75.9
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.0e-28 129.4 78 76.9
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 2.0e-28 129.4 78 78.2
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.0e-28 129.4 79 78.5
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 3.4e-28 128.6 79 74.7
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.4e-28 128.6 99 64.6
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 5.7e-28 127.9 80 77.5
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 5.7e-28 127.9 78 78.2
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 5.7e-28 127.9 101 59.4
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 5.7e-28 127.9 96 64.6
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 7.5e-28 127.5 101 63.4
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 9.8e-28 127.1 98 63.3
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 9.8e-28 127.1 98 63.3
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 9.8e-28 127.1 98 63.3
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 9.8e-28 127.1 78 78.2
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 9.8e-28 127.1 78 76.9
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 1.3e-27 126.7 79 74.7
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.7e-27 126.3 78 74.4
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.7e-27 126.3 99 63.6
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.7e-27 126.3 92 68.5
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 2.2e-27 125.9 81 74.1
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 4.9e-27 124.8 72 80.6
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 4.9e-27 124.8 106 57.5
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 8.3e-27 124.0 81 72.8
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 8.3e-27 124.0 76 77.6
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.1e-26 123.6 78 74.4
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.8e-26 122.9 79 73.4
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 1.8e-26 122.9 78 74.4
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 3.1e-26 122.1 78 71.8
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 3.1e-26 122.1 72 76.4
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 5.4e-26 121.3 82 69.5
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 9.2e-26 120.6 73 75.3
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 9.2e-26 120.6 79 72.2
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.2e-25 120.2 72 77.8
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.6e-25 119.8 98 62.2
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 4.5e-25 118.2 79 73.4
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.3e-24 116.7 75 73.3
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 1.7e-24 116.3 78 70.5
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.5e-23 113.2 78 70.5
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 6.1e-22 107.8 72 69.4
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 3.0e-21 105.5 70 74.3
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 4.0e-21 105.1 84 54.8
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 2.6e-20 102.4 96 51.0
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 2.6e-20 102.4 115 51.3
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 5.9e-17 91.3 73 57.5
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 1.7e-16 89.7 69 58.0
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 3.9e-16 88.6 53 77.4
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.0e-16 88.2 61 73.8
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 6.6e-16 87.8 82 57.3
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 7.3e-15 84.3 80 57.5
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 2.8e-14 82.4 58 74.1
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 6.2e-14 81.3 50 72.0
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.4e-13 80.1 46 71.7
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 8.9e-13 77.4 98 51.0
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 7.5e-12 74.3 48 79.2
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 9.8e-12 73.9 61 65.6
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.7e-11 72.0 48 77.1
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.9e-11 71.6 48 77.1
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.1e-10 70.5 48 75.0
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.1e-10 70.5 48 72.9
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.0e-08 63.9 43 74.4
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.3e-08 62.8 35 71.4
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.3e-08 62.8 43 74.4
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 8.6e-08 60.8 51 58.8
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 2.8e-06 55.8 33 81.8


User provided reference genes

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