Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 3.0e-127 458.8 272 100.0
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-68 261.5 167 77.2
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.0e-68 261.5 167 77.2
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.0e-67 260.0 167 76.6
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 5.6e-65 251.9 169 72.2
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.6e-65 251.9 169 74.0
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.3e-65 251.5 167 74.3
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 1.8e-63 246.9 169 70.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.7e-61 240.4 167 70.7
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.9e-61 239.6 169 72.2
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.4e-60 236.5 164 71.3
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 3.2e-60 236.1 164 71.3
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-59 233.0 161 71.4
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.5e-59 232.6 162 69.8
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 3.5e-59 232.6 162 71.0
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-58 230.3 159 71.7
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 8.6e-58 228.0 165 67.3
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 8.6e-58 228.0 165 67.9
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.5e-57 227.3 170 66.5
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.5e-57 227.3 171 63.2
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 2.5e-57 226.5 163 67.5
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.5e-57 226.5 165 66.1
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.5e-57 226.5 164 67.1
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-57 226.5 163 69.9
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 3.3e-57 226.1 162 67.9
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 5.6e-57 225.3 164 65.9
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.6e-57 225.3 164 66.5
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.6e-56 223.8 165 65.5
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.6e-56 223.8 165 65.5
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.1e-56 223.4 165 66.1
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 3.6e-56 222.6 169 61.5
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 4.7e-56 222.2 166 64.5
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.0e-56 221.5 165 65.5
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.0e-56 221.5 165 65.5
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.0e-55 221.1 163 68.1
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.4e-55 220.7 172 61.0
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.4e-55 220.7 164 65.2
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.8e-55 220.3 167 65.3
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 2.3e-55 219.9 167 64.1
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 4.0e-55 219.2 164 65.2
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 4.0e-55 219.2 162 65.4
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 6.8e-55 218.4 169 61.5
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 8.9e-55 218.0 169 60.4
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 8.9e-55 218.0 160 66.2
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 8.9e-55 218.0 167 62.9
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.5e-54 217.2 164 64.0
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.5e-54 217.2 164 64.0
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.0e-54 216.9 169 60.4
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 2.0e-54 216.9 165 62.4
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 2.6e-54 216.5 156 67.3
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.6e-54 216.5 165 62.4
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 4.4e-54 215.7 176 61.4
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.4e-54 215.7 159 67.9
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.3e-53 214.2 171 60.2
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.3e-53 214.2 167 62.3
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 2.2e-53 213.4 164 64.0
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.9e-53 213.0 164 61.6
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 2.9e-53 213.0 160 65.6
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 3.7e-53 212.6 160 63.8
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 4.9e-53 212.2 169 61.5
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 4.9e-53 212.2 164 63.4
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.9e-53 212.2 171 59.6
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 6.4e-53 211.8 160 68.8
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 6.4e-53 211.8 162 63.0
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.1e-52 211.1 169 59.8
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 2.4e-52 209.9 169 60.4
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 2.4e-52 209.9 171 59.1
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 4.1e-52 209.1 167 60.5
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 9.2e-52 208.0 165 63.0
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.0e-51 206.8 158 63.9
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 4.6e-51 205.7 158 62.7
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.3e-50 204.1 202 53.5
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.3e-50 204.1 202 53.5
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.7e-50 203.8 165 61.2
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 2.3e-50 203.4 165 61.2
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.3e-50 203.4 168 57.1
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.0e-50 203.0 163 61.3
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 3.0e-50 203.0 164 61.6
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 3.9e-50 202.6 163 60.7
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.9e-50 202.6 185 54.6
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 3.9e-50 202.6 165 61.2
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 5.0e-50 202.2 165 61.2
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 6.6e-50 201.8 211 51.2
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 8.6e-50 201.4 165 60.6
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.5e-49 200.7 168 56.0
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.5e-49 200.7 159 59.7
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.9e-49 200.3 126 77.0
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.9e-49 200.3 169 58.6
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.2e-48 197.6 185 55.7
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.6e-48 197.2 164 58.5
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.6e-48 197.2 161 59.6
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.6e-48 197.2 164 58.5
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 2.8e-48 196.4 164 58.5
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 4.7e-48 195.7 166 57.2
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-47 194.1 159 62.9
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.4e-47 194.1 191 55.0
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.8e-47 193.7 171 57.3
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 2.3e-47 193.4 171 57.3
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 6.8e-47 191.8 171 56.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.2e-46 191.0 165 55.8
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.5e-46 190.7 171 55.6
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.5e-46 190.7 171 55.6
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-46 190.3 138 70.3
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-46 189.9 134 69.4
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 2.6e-46 189.9 123 74.8
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.6e-46 189.9 128 72.7
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 4.4e-46 189.1 164 56.7
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 5.8e-46 188.7 171 55.0
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 5.8e-46 188.7 158 55.1
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 9.8e-46 188.0 161 55.3
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 9.8e-46 188.0 158 58.9
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 9.8e-46 188.0 148 62.2
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.3e-45 187.6 163 55.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 3.7e-45 186.0 136 72.1
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 4.9e-45 185.7 158 53.8
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 6.4e-45 185.3 166 53.0
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 8.3e-45 184.9 160 57.5
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.1e-44 184.5 163 55.2
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.9e-44 183.7 165 57.0
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.4e-44 183.3 157 55.4
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.4e-44 183.3 157 55.4
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.4e-44 183.3 157 55.4
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 4.1e-44 182.6 165 52.7
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.1e-44 182.6 168 58.9
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 9.2e-44 181.4 153 58.2
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.8e-43 178.3 138 64.5
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-41 174.5 119 69.7
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 6.2e-40 168.7 99 79.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 5.8e-38 162.2 162 52.5
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.8e-37 159.5 123 65.0
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.2e-36 156.4 159 46.5
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.7e-35 153.3 131 57.3
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.0e-34 151.4 163 44.8
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.5e-33 147.5 119 63.0
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.9e-33 147.1 157 51.6
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 6.2e-32 142.1 164 41.5
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 8.1e-32 141.7 162 45.1
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.1e-31 141.4 165 46.1
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.1e-31 141.4 152 42.1
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 3.1e-31 139.8 117 55.6
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 4.4e-30 136.0 157 42.0
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.4e-28 130.2 92 70.7
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 3.2e-28 129.8 93 72.0
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 7.8e-27 125.2 162 36.4
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.3e-26 124.4 149 41.6
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.1e-25 121.3 90 64.4
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 3.6e-24 116.3 76 69.7
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 6.2e-24 115.5 91 61.5
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.2e-22 111.3 71 73.2
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-22 109.0 92 60.9
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.9e-21 105.9 113 53.1
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 7.6e-14 82.0 73 54.8
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 7.1e-12 75.5 164 28.0
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.9e-11 72.0 49 69.4
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.1e-10 69.3 64 54.7
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 4.3e-09 66.2 112 38.4


User provided reference genes

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