Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.0e-203 712.2 362 100.0
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 2.6e-195 685.3 362 94.8
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.7e-194 682.6 362 95.0
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 2.9e-194 681.8 362 93.4
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 6.4e-194 680.6 362 94.8
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 9.3e-193 676.8 362 93.1
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 2.8e-157 558.9 380 74.2
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 1.6e-155 553.1 363 75.5
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.6e-155 553.1 364 75.8
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 5.0e-154 548.1 364 74.2
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.5e-153 546.6 363 74.9
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.4e-151 540.0 364 73.6
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 3.0e-151 538.9 362 72.9
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 6.7e-151 537.7 364 72.0
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 8.8e-151 537.3 364 72.8
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 2.6e-150 535.8 363 73.6
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 5.7e-150 534.6 366 72.1
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 7.5e-150 534.3 362 72.7
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 9.7e-150 533.9 364 71.4
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 2.8e-149 532.3 363 71.6
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 3.7e-149 531.9 362 71.0
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 4.8e-149 531.6 364 72.8
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 6.3e-149 531.2 359 72.7
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.1e-148 530.4 363 71.6
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 4.1e-148 528.5 364 72.8
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 4.1e-148 528.5 364 72.8
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 4.1e-148 528.5 359 72.4
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 5.3e-148 528.1 374 71.7
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 5.3e-148 528.1 385 68.6
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.6e-147 526.6 364 71.2
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 5.9e-147 524.6 367 70.6
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.0e-146 523.9 357 71.4
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.2e-146 522.7 367 71.4
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.8e-146 521.9 363 71.1
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 5.0e-146 521.5 362 71.5
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 1.9e-145 519.6 362 69.3
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.9e-145 519.6 364 71.4
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.9e-145 519.6 364 72.0
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.2e-145 518.8 363 70.8
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 7.2e-145 517.7 363 70.5
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 9.4e-145 517.3 363 70.8
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.2e-144 516.9 363 70.8
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.6e-144 516.5 364 71.4
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 3.6e-144 515.4 365 71.5
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 8.0e-144 514.2 362 72.9
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.0e-143 513.8 366 70.2
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.0e-143 511.9 363 70.2
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.0e-143 511.9 363 70.2
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 5.2e-143 511.5 364 70.6
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.2e-142 510.4 363 70.0
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 2.0e-142 509.6 364 70.3
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.0e-142 509.6 365 71.2
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 5.7e-142 508.1 364 70.3
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 2.8e-141 505.8 365 69.6
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 8.3e-141 504.2 364 71.2
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.1e-140 503.8 364 71.2
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.1e-140 503.8 364 69.8
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 3.1e-140 502.3 363 69.7
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.6e-139 500.0 366 68.9
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.0e-139 499.6 364 69.2
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 2.7e-139 499.2 363 68.3
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 7.7e-139 497.7 363 70.0
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.0e-138 497.3 363 70.8
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.3e-138 496.9 362 68.8
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.8e-138 495.4 337 72.1
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 6.5e-138 494.6 365 69.3
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 3.2e-137 492.3 364 68.4
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 1.8e-135 486.5 307 75.6
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.6e-134 482.6 356 69.1
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 2.6e-134 482.6 369 65.9
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.8e-133 479.2 372 66.1
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.8e-132 476.5 391 63.2
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.3e-130 470.3 365 68.2
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 5.0e-130 468.4 359 66.0
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 5.0e-130 468.4 362 64.4
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 5.0e-130 468.4 362 64.9
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.5e-129 466.8 362 64.6
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 2.1e-128 463.0 363 65.0
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.3e-127 459.5 363 66.1
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 5.2e-127 458.4 364 64.8
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 6.8e-127 458.0 364 64.3
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 8.9e-127 457.6 354 65.3
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.2e-126 457.2 364 65.9
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.5e-126 456.8 362 63.3
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 2.6e-126 456.1 362 63.5
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 3.4e-126 455.7 370 64.6
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 3.4e-126 455.7 364 64.3
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.3e-125 453.8 363 64.2
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 3.2e-124 449.1 389 60.7
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 5.4e-124 448.4 318 70.1
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.0e-122 444.1 333 68.2
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.3e-122 443.0 366 62.3
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.5e-121 440.3 377 62.1
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 3.3e-121 439.1 366 62.0
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 5.0e-114 415.2 367 59.4
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 6.6e-114 414.8 364 63.7
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 9.5e-113 411.0 302 67.9
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 4.7e-112 408.7 277 72.6
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 6.2e-112 408.3 362 59.1
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 2.3e-111 406.4 361 59.6
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 8.9e-111 404.4 356 59.8
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.2e-109 399.8 340 61.8
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 6.4e-109 398.3 361 59.3
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.2e-104 381.7 377 57.0
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.1e-103 379.4 384 50.8
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.3e-98 364.0 308 59.1
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 9.6e-97 357.8 243 71.6
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 6.9e-87 325.1 375 46.7
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.4e-84 317.4 387 45.5
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.5e-78 297.4 215 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 2.6e-78 296.6 416 42.5
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 9.9e-78 294.7 277 56.3
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.1e-71 274.6 364 47.0
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 4.2e-68 262.7 169 76.3
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 3.5e-67 259.6 306 48.4
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 3.9e-66 256.1 169 73.4
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.1e-65 254.6 196 65.8
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 3.7e-64 249.6 198 65.2
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-62 244.6 213 62.4
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.3e-58 230.3 194 64.4
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-53 214.9 161 69.6
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.9e-52 210.7 122 85.2
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.7e-51 206.1 122 83.6
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 7.2e-44 182.2 200 53.0
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-43 181.4 137 68.6
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 3.6e-43 179.9 165 57.6
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.1e-41 174.9 307 37.1
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 1.5e-41 174.5 253 41.5
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.2e-40 170.6 122 73.0
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-38 164.9 136 65.4
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.8e-37 159.8 141 62.4
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 9.7e-33 145.2 207 40.6
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 1.1e-31 141.7 136 58.1
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 4.7e-27 126.3 114 55.3
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.0e-26 123.6 72 80.6
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.4e-25 119.8 82 69.5
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 9.1e-23 112.1 72 80.6
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 2.1e-19 100.9 383 21.9
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.8e-18 97.8 77 58.4
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-15 87.4 136 35.3


User provided reference genes

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