Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-74 283.1 146 100.0
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 2.9e-68 261.9 139 96.4
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-53 213.4 146 76.0
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-53 213.4 146 76.0
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 3.4e-53 211.8 146 75.3
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.2e-52 209.1 145 73.8
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.9e-52 208.0 144 73.6
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.2e-51 205.3 146 70.5
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.1e-50 202.6 145 70.3
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.9e-48 196.1 146 67.8
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.5e-48 195.7 146 68.5
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 7.4e-48 194.1 145 64.1
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 9.6e-48 193.7 145 64.1
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 9.6e-48 193.7 145 71.0
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.6e-47 193.0 146 67.8
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 2.1e-47 192.6 145 64.8
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 2.8e-47 192.2 144 63.2
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.7e-47 191.8 144 68.8
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-46 190.3 146 63.7
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.4e-46 189.9 146 61.6
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.4e-46 189.9 145 62.8
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.1e-46 188.7 146 65.8
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 4.0e-46 188.3 133 66.9
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 6.9e-46 187.6 138 63.8
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 6.9e-46 187.6 137 64.2
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 6.9e-46 187.6 137 64.2
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.9e-46 187.6 146 65.1
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 9.0e-46 187.2 145 64.1
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.2e-45 186.8 146 64.4
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.2e-45 186.8 146 61.0
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.5e-45 186.4 146 65.8
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.5e-45 186.4 137 63.5
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 2.0e-45 186.0 144 63.9
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.0e-45 186.0 144 61.1
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.0e-45 186.0 133 67.7
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.0e-45 186.0 133 67.7
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 2.6e-45 185.7 144 65.3
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.6e-45 185.7 145 60.7
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 4.5e-45 184.9 136 72.1
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 7.6e-45 184.1 145 66.2
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 7.6e-45 184.1 147 63.3
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 7.6e-45 184.1 134 64.9
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.0e-44 183.7 145 63.4
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.0e-44 183.7 145 58.6
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.0e-44 183.7 133 66.9
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.3e-44 183.3 145 58.6
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.7e-44 183.0 145 61.4
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.7e-44 183.0 145 61.4
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-44 183.0 140 67.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.9e-44 182.2 145 61.4
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 4.9e-44 181.4 145 60.0
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 4.9e-44 181.4 133 64.7
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 4.9e-44 181.4 134 64.2
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 4.9e-44 181.4 133 64.7
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 6.5e-44 181.0 145 59.3
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 8.4e-44 180.6 145 58.6
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.1e-43 180.3 147 63.9
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.1e-43 180.3 145 60.7
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.4e-43 179.9 127 71.7
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.9e-43 179.5 145 59.3
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 2.5e-43 179.1 133 63.2
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.5e-43 179.1 131 68.7
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 5.5e-43 177.9 145 60.0
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 5.5e-43 177.9 140 58.6
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 5.5e-43 177.9 146 62.3
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 9.3e-43 177.2 152 57.9
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.2e-42 176.8 145 60.0
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-42 175.6 133 67.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 2.7e-42 175.6 133 67.7
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.5e-42 175.3 133 67.7
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 7.9e-42 174.1 182 50.5
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 7.9e-42 174.1 182 50.5
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 7.9e-42 174.1 144 60.4
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 7.9e-42 174.1 133 58.6
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.3e-41 173.3 133 63.2
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.3e-41 173.3 133 63.2
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.8e-41 172.9 146 58.9
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.8e-41 172.9 133 63.2
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.0e-41 172.2 133 63.2
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 3.0e-41 172.2 145 60.0
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 5.1e-41 171.4 134 61.9
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.1e-41 171.4 133 66.2
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.1e-40 170.2 133 62.4
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.5e-40 169.9 133 62.4
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.5e-40 169.9 133 60.9
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.5e-40 169.9 133 59.4
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.9e-40 169.5 134 59.7
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.9e-40 169.5 134 59.7
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-40 169.1 133 66.9
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 4.3e-40 168.3 133 59.4
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 5.7e-40 167.9 145 59.3
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 7.4e-40 167.5 187 51.3
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.3e-39 166.8 133 60.9
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.3e-39 166.8 133 60.9
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.3e-39 166.8 133 57.9
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.6e-39 166.4 133 61.7
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-39 166.4 118 70.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.6e-39 166.4 133 56.4
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.2e-39 166.0 133 60.9
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 3.7e-39 165.2 133 60.9
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 6.3e-39 164.5 146 56.8
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 8.2e-39 164.1 145 57.2
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 3.1e-38 162.2 174 51.1
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.3e-38 161.4 133 56.4
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 5.3e-38 161.4 145 56.6
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.9e-38 161.0 133 55.6
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 6.9e-38 161.0 133 55.6
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.9e-38 161.0 133 55.6
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.2e-37 160.2 133 57.1
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-37 160.2 140 59.3
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.5e-37 159.8 133 57.9
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.0e-37 159.5 133 57.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 3.4e-37 158.7 133 56.4
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 3.4e-37 158.7 145 53.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 5.9e-37 157.9 165 52.7
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 7.7e-37 157.5 154 51.9
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 7.7e-37 157.5 133 59.4
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.3e-36 156.8 133 54.1
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.7e-36 156.4 134 56.0
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 3.8e-36 155.2 133 57.1
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 8.5e-36 154.1 124 60.5
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.9e-35 152.9 146 52.1
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.6e-34 149.8 146 50.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-34 149.4 114 64.9
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.1e-34 147.9 133 60.9
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 2.5e-32 142.5 141 48.2
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.5e-32 142.5 105 63.8
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.7e-32 141.4 108 67.6
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 7.4e-32 141.0 133 56.4
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.7e-31 139.8 133 49.6
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.8e-31 138.3 121 59.5
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 6.3e-31 137.9 96 71.9
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 8.2e-31 137.5 133 45.1
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.1e-30 137.1 115 60.9
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.2e-29 133.7 100 65.0
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 5.9e-29 131.3 120 54.2
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.5e-28 127.5 97 68.0
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.5e-27 125.9 133 47.4
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 3.6e-26 122.1 134 45.5
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 7.9e-26 120.9 134 42.5
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-25 119.4 91 69.2
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 6.7e-25 117.9 129 43.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 2.2e-23 112.8 133 38.3
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 7.0e-22 107.8 81 65.4
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.7e-21 104.4 111 53.2
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 6.5e-20 101.3 81 60.5
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.9e-19 99.8 63 81.0
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.7e-18 95.1 111 53.2
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.8e-17 93.2 63 71.4
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 8.8e-17 90.9 64 68.8
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-14 83.2 66 63.6
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.7e-12 76.6 56 58.9
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-10 70.5 62 54.8


User provided reference genes

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