Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2880.9 1484 100.0
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2704.9 1484 94.1
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2696.8 1484 93.7
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2426.7 1291 97.6
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2355.1 1499 80.5
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2330.8 1493 80.2
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2317.3 1498 79.3
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2307.3 1496 79.1
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2291.5 1495 78.5
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2291.2 1495 78.5
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2288.8 1532 77.0
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2287.7 1491 78.5
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2286.5 1498 77.5
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2279.2 1481 79.0
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2279.2 1498 77.6
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2264.6 1498 76.3
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2263.4 1489 77.9
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2254.2 1497 76.2
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2247.6 1498 76.6
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2247.6 1497 76.6
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2242.2 1500 76.7
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2238.8 1498 76.9
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2238.4 1498 75.6
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2233.8 1498 76.4
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2232.2 1498 75.3
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2218.7 1554 74.2
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2204.5 1494 75.4
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2198.3 1497 75.1
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2198.3 1493 74.9
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2197.2 1533 73.2
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2192.9 1489 75.0
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2192.5 1498 75.3
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2191.8 1492 75.1
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2191.4 1569 72.8
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2182.5 1498 74.8
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2179.8 1454 76.6
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2177.9 1498 74.2
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2171.4 1498 74.0
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2169.0 1496 74.3
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2167.5 1498 74.4
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2166.7 1497 73.5
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2161.0 1497 73.6
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2158.6 1497 73.5
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2157.1 1497 73.8
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2156.7 1498 73.6
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2153.6 1497 73.5
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2153.3 1497 73.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2151.7 1490 73.9
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2147.9 1497 73.1
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2147.5 1477 74.3
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2145.2 1496 74.0
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 2143.2 1432 78.9
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2142.9 1498 72.7
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2140.9 1497 72.9
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2138.2 1481 73.9
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2135.1 1496 73.9
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2129.0 1497 72.4
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2126.7 1492 73.0
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2125.5 1481 73.9
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2124.7 1494 73.1
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2122.4 1487 72.9
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2103.2 1490 71.8
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2080.1 1547 70.0
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2075.4 1490 70.9
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2073.5 1493 71.3
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2073.5 1502 71.4
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2066.2 1306 81.6
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2065.0 1470 72.4
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2054.6 1492 70.8
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2052.3 1493 70.8
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2046.2 1492 70.4
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2042.7 1492 70.9
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2039.2 1486 69.9
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2038.5 1491 70.8
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2035.0 1492 70.0
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2034.6 1495 69.5
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2031.5 1489 70.4
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2026.9 1496 69.1
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2026.5 1499 70.2
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2026.5 1496 70.0
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2024.6 1488 70.4
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2023.4 1499 70.0
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2014.6 1480 70.5
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2011.1 1277 80.5
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2008.0 1491 69.8
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2007.3 1501 69.5
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2007.3 1498 69.6
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2005.3 1490 69.2
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2003.4 1499 69.5
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2003.0 1504 69.5
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2002.6 1500 69.6
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1999.6 1489 69.1
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1999.2 1493 68.7
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1963.0 1574 66.4
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1958.0 1462 69.3
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1934.8 1305 77.0
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1911.3 1309 75.6
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1906.0 1506 66.1
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1886.7 1385 72.7
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1871.3 1587 64.7
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1862.0 1480 64.5
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1856.6 1225 78.0
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1810.4 1483 62.9
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1796.6 1664 59.6
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1793.1 1368 68.9
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1773.1 1407 70.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1699.5 1436 61.3
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1645.6 1379 67.7
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1602.4 1515 56.1
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1581.6 1365 66.2
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1580.5 1526 55.8
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1565.8 988 79.7
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1389.0 1088 67.2
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1345.5 1279 61.8
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1328.5 1216 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1323.1 1297 55.4
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1130.2 739 78.8
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1088.2 774 75.6
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1080.1 920 67.4
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 9.4e-300 1034.2 847 63.5
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 9.4e-292 1007.7 748 68.0
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 5.0e-261 905.6 706 66.7
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.2e-239 833.2 578 71.3
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 4.9e-216 756.1 613 64.8
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.5e-191 674.1 599 60.1
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.4e-181 641.7 892 44.3
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 5.7e-172 609.8 742 47.7
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-169 602.1 379 77.6
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.0e-169 601.3 443 73.4
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 7.3e-159 566.2 475 65.7
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.2e-158 565.5 473 63.4
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.7e-131 475.3 572 50.3
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.0e-112 412.9 775 36.9
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 5.6e-103 380.6 1849 25.0
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.8e-96 359.0 1559 26.9
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.3e-96 358.6 444 47.7
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.7e-94 351.3 218 81.2
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 7.7e-92 343.6 1598 25.4
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.2e-86 325.5 396 51.0
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 3.2e-82 311.6 152 98.0
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.9e-76 290.8 224 63.8
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.0e-75 290.0 233 64.4
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.0e-72 278.5 230 62.6
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.1e-69 268.5 265 55.8
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 3.6e-65 255.0 155 72.3
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.0e-64 253.4 195 64.6
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 3.1e-45 188.7 102 84.3
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.0e-43 183.7 188 58.5
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 2.1e-41 176.0 1368 22.9
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 8.0e-41 174.1 190 51.6
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 8.3e-38 164.1 155 54.2
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.4e-37 163.3 223 48.9
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 6.2e-33 147.9 127 57.5
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 9.8e-31 140.6 131 56.5
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.1e-28 132.9 343 31.2
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.5e-26 126.7 101 65.3
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 2.0e-23 116.3 56 89.3
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 2.6e-23 115.9 91 59.3
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 2.6e-23 115.9 96 57.3
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.4e-21 109.4 58 81.0
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.7e-19 103.2 66 69.7
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.1e-16 94.0 136 41.9
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 9.9e-15 87.4 112 48.2
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.9e-14 85.1 70 60.0
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.4e-13 83.6 53 71.7
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.4e-13 83.6 53 71.7
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 4.8e-09 68.6 40 85.0
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 1.5e-07 63.5 34 76.5
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 9.9e-07 60.8 51 56.9
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 8.4e-06 57.8 130 30.0


User provided reference genes

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