Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G144.12 Capsicum annuum HOM05D003266 ORTHO05D003718 5.9e-109 397.5 195 100.0
PGSC0003DMG400026462 Solanum tuberosum HOM05D003266 ORTHO05D003718 3.2e-62 242.3 224 61.6
Sopen12g022640 Solanum pennellii HOM05D003266 ORTHO05D003718 5.9e-61 238.0 224 61.6
Solyc12g044370.3 Solanum lycopersicum HOM05D003266 ORTHO05D003718 5.6e-59 231.5 224 60.7
Nitab4.5_0003039g0050 Nicotiana tabacum HOM05D003266 ORTHO05D003718 3.3e-43 179.1 225 48.0
Nitab4.5_0013558g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.7e-39 166.8 225 46.2
Nitab4.5_0002424g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 2.2e-39 166.4 225 46.2
CAN.G438.41 Capsicum annuum HOM05D003266 ORTHO05D003718 1.6e-37 160.2 223 43.9
Sopen00g008370 Solanum pennellii HOM05D003266 ORTHO05D003718 1.6e-37 160.2 219 46.1
MSTRG.22654 Avicennia marina HOM05D003266 ORTHO05D003718 2.7e-37 159.5 198 49.5
Peaxi162Scf00015g00241 Petunia axillaris HOM05D003266 ORTHO05D003718 3.5e-37 159.1 185 51.9
PGSC0003DMG401002553 Solanum tuberosum HOM05D003266 ORTHO05D003718 1.0e-36 157.5 224 44.6
Solyc03g120470.4 Solanum lycopersicum HOM05D003266 ORTHO05D003718 1.5e-35 153.7 207 47.3
Migut.I00926 Erythranthe guttata HOM05D003266 ORTHO05D003718 1.9e-35 153.3 183 48.6
QL05p021182 Quercus lobata HOM05D003266 ORTHO05D003718 4.3e-35 152.1 206 47.6
Cfa002112 Carpinus fangiana HOM05D003266 ORTHO05D003718 1.2e-34 150.6 211 46.9
Haze_16335 Corylus avellana HOM05D003266 ORTHO05D003718 1.2e-34 150.6 211 46.9
Potri.001G186900 Populus trichocarpa HOM05D003266 ORTHO05D003718 1.2e-34 150.6 183 50.3
CSS0038057 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 4.7e-34 148.7 198 47.5
Sabra01G0153400 Salix brachista HOM05D003266 ORTHO05D003718 4.7e-34 148.7 183 49.2
CiPaw.01G233800 Carya illinoinensis HOM05D003266 ORTHO05D003718 1.1e-33 147.5 226 42.5
Sp3g14630 Schrenkiella parvula HOM05D003266 ORTHO05D003718 1.8e-33 146.7 186 47.8
Dinv38001 Davidia involucrata HOM05D003266 ORTHO05D003718 3.1e-33 146.0 227 43.2
THA.LOC104817970 Tarenaya hassleriana HOM05D003266 ORTHO05D003718 4.0e-33 145.6 185 48.1
Glyma.13G356200 Glycine max HOM05D003266 ORTHO05D003718 5.2e-33 145.2 203 44.3
SalBow2G0145 Salvia bowleyana HOM05D003266 ORTHO05D003718 5.2e-33 145.2 184 47.3
Aa31LG10G2720 Aethionema arabicum HOM05D003266 ORTHO05D003718 9.0e-33 144.4 194 46.4
arahy.Tifrunner.gnm1.ann1.X5C2Q6 Arachis hypogaea HOM05D003266 ORTHO05D003718 1.2e-32 144.1 191 44.5
Lj5C56T10 Lonicera japonica HOM05D003266 ORTHO05D003718 1.2e-32 144.1 190 46.8
Lalb_Chr24g0396021 Lupinus albus HOM05D003266 ORTHO05D003718 1.2e-32 144.1 204 44.6
Manes.11G036300 Manihot esculenta HOM05D003266 ORTHO05D003718 1.2e-32 144.1 183 47.0
Nn2g12597 Nelumbo nucifera HOM05D003266 ORTHO05D003718 1.2e-32 144.1 223 41.3
VMungo1080G0852 Vigna mungo HOM05D003266 ORTHO05D003718 1.2e-32 144.1 201 45.3
Glyma.15G017900 Glycine max HOM05D003266 ORTHO05D003718 1.5e-32 143.7 203 45.8
Peaxi162Scf00034g00317 Petunia axillaris HOM05D003266 ORTHO05D003718 1.5e-32 143.7 198 44.9
vmacro18872 Vaccinium macrocarpon HOM05D003266 ORTHO05D003718 1.5e-32 143.7 194 46.9
Atru.chr1.3468 Acer truncatum HOM05D003266 ORTHO05D003718 2.6e-32 142.9 185 45.9
AL3G29000 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 2.6e-32 142.9 186 45.7
BcaB06g25715 Brassica carinata HOM05D003266 ORTHO05D003718 2.6e-32 142.9 193 44.6
HanXRQChr09g0275951 Helianthus annuus HOM05D003266 ORTHO05D003718 2.6e-32 142.9 196 45.4
GSVIVG01017040001 Vitis vinifera HOM05D003266 ORTHO05D003718 2.6e-32 142.9 194 45.4
CSS0038683 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 3.4e-32 142.5 209 44.0
BolC5t33776H Brassica oleracea HOM05D003266 ORTHO05D003718 4.4e-32 142.1 183 46.4
CARHR091470 Cardamine hirsuta HOM05D003266 ORTHO05D003718 5.8e-32 141.7 186 45.7
arahy.Tifrunner.gnm1.ann1.MP8KIY Arachis hypogaea HOM05D003266 ORTHO05D003718 7.6e-32 141.4 191 44.0
Lalb_Chr22g0351451 Lupinus albus HOM05D003266 ORTHO05D003718 7.6e-32 141.4 204 45.1
BraA05t22151Z Brassica rapa HOM05D003266 ORTHO05D003718 9.9e-32 141.0 183 47.5
Thhalv10019999m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 1.3e-31 140.6 186 45.7
PSO210G6470 Papaver somniferum HOM05D003266 ORTHO05D003718 1.3e-31 140.6 191 47.1
C05p50250 Brassica napus HOM05D003266 ORTHO05D003718 1.7e-31 140.2 183 45.9
A05p33260 Brassica napus HOM05D003266 ORTHO05D003718 2.2e-31 139.8 183 47.5
Aqoxy7G01499 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 3.8e-31 139.0 192 46.9
Cc04_g02800 Coffea canephora HOM05D003266 ORTHO05D003718 3.8e-31 139.0 214 41.1
AT3G16260 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 4.9e-31 138.7 186 44.6
BcaC05g28901 Brassica carinata HOM05D003266 ORTHO05D003718 4.9e-31 138.7 183 47.0
PSO210G4271 Papaver somniferum HOM05D003266 ORTHO05D003718 4.9e-31 138.7 191 46.6
RcHm_v2.0_Chr2g0139581 Rosa chinensis HOM05D003266 ORTHO05D003718 8.4e-31 137.9 214 44.4
Oeu040356.1 Olea europaea HOM05D003266 ORTHO05D003718 1.1e-30 137.5 187 46.5
TWI12G1119 Tripterygium wilfordii HOM05D003266 ORTHO05D003718 1.4e-30 137.1 191 45.0
FvH4_6g31990 Fragaria vesca HOM05D003266 ORTHO05D003718 1.9e-30 136.7 214 41.6
FAN05G1225 Fragaria x ananassa HOM05D003266 ORTHO05D003718 1.9e-30 136.7 214 43.9
FAN14G1864 Fragaria x ananassa HOM05D003266 ORTHO05D003718 1.9e-30 136.7 214 41.6
Lsat_1_v5_gn_4_100861 Lactuca sativa HOM05D003266 ORTHO05D003718 2.4e-30 136.3 196 42.9
Rhsim08G0225600 Rhododendron simsii HOM05D003266 ORTHO05D003718 2.4e-30 136.3 196 44.9
TAR626G0182 Trochodendron aralioides HOM05D003266 ORTHO05D003718 2.4e-30 136.3 228 40.4
TAR636G2661 Trochodendron aralioides HOM05D003266 ORTHO05D003718 2.4e-30 136.3 228 40.4
AT1G52160 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 4.2e-30 135.6 184 46.2
ClCG09G001800 Citrullus lanatus HOM05D003266 ORTHO05D003718 4.2e-30 135.6 209 43.5
TAR383G0500 Trochodendron aralioides HOM05D003266 ORTHO05D003718 4.2e-30 135.6 216 43.5
Lj9C510G10 Lonicera japonica HOM05D003266 ORTHO05D003718 5.4e-30 135.2 184 43.5
Lj3g0015133 Lotus japonicus HOM05D003266 ORTHO05D003718 5.4e-30 135.2 191 43.5
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 5.4e-30 135.2 220 43.2
CsaV3_7G033540 Cucumis sativus L. HOM05D003266 ORTHO05D003718 7.1e-30 134.8 212 41.5
Phvul.005G170100 Phaseolus vulgaris HOM05D003266 ORTHO05D003718 7.1e-30 134.8 203 43.8
Psat5g297200 Pisum sativum HOM05D003266 ORTHO05D003718 7.1e-30 134.8 192 43.8
TPR.G37248 Trifolium pratense HOM05D003266 ORTHO05D003718 9.3e-30 134.4 190 43.2
Prupe.3G063700 Prunus persica HOM05D003266 ORTHO05D003718 1.2e-29 134.0 212 42.0
Sed0017993 Sechium edule HOM05D003266 ORTHO05D003718 1.2e-29 134.0 198 46.0
MD03G1197500 Malus domestica HOM05D003266 ORTHO05D003718 1.6e-29 133.7 213 43.2
Aa31LG8G3410 Aethionema arabicum HOM05D003266 ORTHO05D003718 2.1e-29 133.3 181 44.2
Ca_01149_v3 Cicer arietinum L. HOM05D003266 ORTHO05D003718 2.1e-29 133.3 217 41.0
Gohir.A10G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 2.1e-29 133.3 188 42.6
Gohir.D10G068200 Gossypium hirsutum HOM05D003266 ORTHO05D003718 2.1e-29 133.3 188 42.6
Gorai.011G072800 Gossypium raimondii HOM05D003266 ORTHO05D003718 2.1e-29 133.3 188 42.6
CSS0002644 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 2.7e-29 132.9 208 44.2
Carub.0003s1601 Capsella rubella HOM05D003266 ORTHO05D003718 2.7e-29 132.9 184 46.2
MELO3C024265.2 Cucumis melo HOM05D003266 ORTHO05D003718 2.7e-29 132.9 209 43.1
EL10Ac9g22044 Beta vulgaris HOM05D003266 ORTHO05D003718 3.5e-29 132.5 194 43.3
ECA232G0114 Erigeron canadensis HOM05D003266 ORTHO05D003718 4.6e-29 132.1 183 44.3
Hma1.2p1_1689F.1_g297710 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 4.6e-29 132.1 216 40.7
Carub.0001s4111 Capsella rubella HOM05D003266 ORTHO05D003718 6.0e-29 131.7 184 45.1
Ciclev10024815m.g Citrus clementina HOM05D003266 ORTHO05D003718 7.8e-29 131.3 184 44.6
AL1G60260 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 1.0e-28 131.0 184 44.6
Medtr2g101390 Medicago truncatula HOM05D003266 ORTHO05D003718 1.3e-28 130.6 193 45.1
Cpa.g.sc34.31 Carica papaya HOM05D003266 ORTHO05D003718 1.7e-28 130.2 183 44.8
DCAR_026337 Daucus carota HOM05D003266 ORTHO05D003718 1.7e-28 130.2 186 44.6
Duzib160G0509 Durio zibethinus HOM05D003266 ORTHO05D003718 1.7e-28 130.2 188 42.6
CARHR042320 Cardamine hirsuta HOM05D003266 ORTHO05D003718 3.0e-28 129.4 194 43.3
Zm00001eb339290 Zea mays HOM05D003266 ORTHO05D003718 3.0e-28 129.4 184 43.5
ATR0705G157 Amborella trichopoda HOM05D003266 ORTHO05D003718 3.9e-28 129.0 202 40.1
AUR62031873 Chenopodium quinoa HOM05D003266 ORTHO05D003718 6.6e-28 128.3 190 41.6
COL.COLO4_30471 Corchorus olitorius HOM05D003266 ORTHO05D003718 8.7e-28 127.9 188 42.0
Sc12g0009560 Simmondsia chinensis HOM05D003266 ORTHO05D003718 1.5e-27 127.1 200 40.0
Sc12g0009670 Simmondsia chinensis HOM05D003266 ORTHO05D003718 1.5e-27 127.1 200 40.0
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 4.3e-27 125.6 217 39.2
HanXRQChr16g0501281 Helianthus annuus HOM05D003266 ORTHO05D003718 4.3e-27 125.6 183 42.6
Thecc.06G095700 Theobroma cacao HOM05D003266 ORTHO05D003718 4.3e-27 125.6 188 41.0
Aqoxy5G00790 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 5.6e-27 125.2 201 42.3
Sed0020980 Sechium edule HOM05D003266 ORTHO05D003718 5.6e-27 125.2 206 43.2
C06p07410 Brassica napus HOM05D003266 ORTHO05D003718 9.6e-27 124.4 187 44.4
BolC6t35830H Brassica oleracea HOM05D003266 ORTHO05D003718 9.6e-27 124.4 187 44.4
Eucgr.J02950 Eucalyptus grandis HOM05D003266 ORTHO05D003718 9.6e-27 124.4 185 44.3
PSO339G2930 Papaver somniferum HOM05D003266 ORTHO05D003718 9.6e-27 124.4 174 43.7
Ah.01g021810 Amaranthus hybridus HOM05D003266 ORTHO05D003718 1.6e-26 123.6 188 42.0
CANSAT80G0796 Cannabis sativa HOM05D003266 ORTHO05D003718 2.1e-26 123.2 174 43.1
A06p02000 Brassica napus HOM05D003266 ORTHO05D003718 3.6e-26 122.5 182 43.4
AUR62032707 Chenopodium quinoa HOM05D003266 ORTHO05D003718 3.6e-26 122.5 188 41.5
BraA06t23416Z Brassica rapa HOM05D003266 ORTHO05D003718 4.8e-26 122.1 186 44.1
Sp1g38720 Schrenkiella parvula HOM05D003266 ORTHO05D003718 4.8e-26 122.1 182 43.4
Hund00661 Selenicereus undatus HOM05D003266 ORTHO05D003718 6.2e-26 121.7 211 37.4
PGR102G0722 Punica granatum HOM05D003266 ORTHO05D003718 1.8e-25 120.2 200 42.5
Actinidia21698 Actinidia chinensis HOM05D003266 ORTHO05D003718 2.4e-25 119.8 218 37.6
Hund09088 Selenicereus undatus HOM05D003266 ORTHO05D003718 7.6e-24 114.8 201 38.3
BcaC08g43373 Brassica carinata HOM05D003266 ORTHO05D003718 9.9e-24 114.4 180 43.9
PSO017G5626 Papaver somniferum HOM05D003266 ORTHO05D003718 2.9e-23 112.8 218 33.9
Thhalv10011231m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 3.8e-23 112.5 184 40.8
Manes.08G110200 Manihot esculenta HOM05D003266 ORTHO05D003718 3.8e-23 112.5 179 38.5
Gohir.D01G054332 Gossypium hirsutum HOM05D003266 ORTHO05D003718 4.2e-22 109.0 180 39.4
Gorai.002G074200 Gossypium raimondii HOM05D003266 ORTHO05D003718 4.2e-22 109.0 180 39.4
Gohir.A01G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 7.1e-22 108.2 194 37.1
SHI11014 Sapria himalayana HOM05D003266 ORTHO05D003718 1.6e-21 107.1 191 40.3
CANSAT80G0873 Cannabis sativa HOM05D003266 ORTHO05D003718 3.5e-21 105.9 171 40.9
Hund06647 Selenicereus undatus HOM05D003266 ORTHO05D003718 4.6e-21 105.5 205 36.6
CANSAT56G3441 Cannabis sativa HOM05D003266 ORTHO05D003718 1.9e-19 100.1 178 38.8
CAN.G394.131 Capsicum annuum HOM05D003266 ORTHO05D003718 1.9e-19 100.1 180 37.2
AUR62024783 Chenopodium quinoa HOM05D003266 ORTHO05D003718 2.5e-19 99.8 180 37.8
Nitab4.5_0000571g0240 Nicotiana tabacum HOM05D003266 ORTHO05D003718 5.6e-19 98.6 188 36.7
Nitab4.5_0001147g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 5.6e-19 98.6 185 37.8
SEGI_12386 Sequoiadendron giganteum HOM05D003266 ORTHO05D003718 5.6e-19 98.6 211 34.1
EL10Ac2g02463 Beta vulgaris HOM05D003266 ORTHO05D003718 7.4e-19 98.2 183 38.3
AUR62032438 Chenopodium quinoa HOM05D003266 ORTHO05D003718 7.4e-19 98.2 182 35.7
COL.COLO4_08423 Corchorus olitorius HOM05D003266 ORTHO05D003718 9.6e-19 97.8 176 38.6
Solyc10g079670.2 Solanum lycopersicum HOM05D003266 ORTHO05D003718 9.6e-19 97.8 186 36.6
Sopen10g030300 Solanum pennellii HOM05D003266 ORTHO05D003718 9.6e-19 97.8 186 36.6
SMO134G0187 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 8.1e-18 94.7 185 34.6
SMO201G0121 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 2.4e-17 93.2 180 37.8
Actinidia32711 Actinidia chinensis HOM05D003266 ORTHO05D003718 1.7e-15 87.0 220 35.0
unitig_748.g8095 Utricularia gibba HOM05D003266 ORTHO05D003718 1.4e-14 84.0 113 42.5
CDE05G0524 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 5.5e-14 82.0 166 37.3
Os01g0232300 Oryza sativa ssp. japonica HOM05D003266 ORTHO05D003718 7.1e-14 81.6 137 37.2
CAN.G641.60 Capsicum annuum HOM05D003266 ORTHO05D003718 1.6e-13 80.5 77 55.8
COL.COLO4_22674 Corchorus olitorius HOM05D003266 ORTHO05D003718 1.6e-13 80.5 100 43.0
Pp3c14_3370 Physcomitrium patens HOM05D003266 ORTHO05D003718 2.1e-13 80.1 193 32.6
PSO384G3548 Papaver somniferum HOM05D003266 ORTHO05D003718 2.7e-13 79.7 75 57.3
SGA_v2.0_scaffold69G23353 Striga asiatica HOM05D003266 ORTHO05D003718 2.7e-13 79.7 186 36.0
Nitab4.5_0001147g0060 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.0e-12 77.8 182 33.5
Mapoly0003s0137 Marchantia polymorpha HOM05D003266 ORTHO05D003718 3.0e-12 76.3 71 50.7
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 1.5e-11 73.9 55 61.8
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 2.8e-10 69.7 59 57.6
Nitab4.5_0006515g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.4e-09 67.4 141 36.9
CBR_g8326 Chara braunii HOM05D003266 ORTHO05D003718 5.3e-09 65.5 62 51.6
Ca_01038_v3 Cicer arietinum L. HOM05D007335 ORTHO05D009113 5.8e-08 62.0 46 65.2
Peaxi162Scf00772g00068 Petunia axillaris HOM05D003266 ORTHO05D003718 9.3e-06 54.7 48 56.2


User provided reference genes

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