Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1081.2 Capsicum annuum HOM05D001758 ORTHO05D004430 1.3e-45 186.0 95 100.0
CAN.G594.5 Capsicum annuum HOM05D000309 ORTHO05D000271 3.4e-38 161.4 95 88.4
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 2.3e-34 148.7 93 82.8
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 2.3e-34 148.7 93 82.8
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 2.3e-34 148.7 93 82.8
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 2.3e-34 148.7 93 82.8
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 2.3e-34 148.7 93 82.8
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 2.3e-34 148.7 93 82.8
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 2.3e-34 148.7 93 81.7
Nn5g30834 Nelumbo nucifera HOM05D001758 ORTHO05D004430 3.0e-34 148.3 93 81.7
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 3.0e-34 148.3 93 81.7
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 3.0e-34 148.3 93 81.7
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 3.9e-34 147.9 93 80.6
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 5.2e-34 147.5 93 80.6
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 5.2e-34 147.5 93 81.7
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 6.7e-34 147.1 93 80.6
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 6.7e-34 147.1 93 81.7
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 8.8e-34 146.7 93 81.7
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 8.8e-34 146.7 93 80.6
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 1.1e-33 146.4 93 80.6
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 1.1e-33 146.4 93 80.6
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 1.1e-33 146.4 93 80.6
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 1.1e-33 146.4 93 80.6
COL.COLO4_34497 Corchorus olitorius HOM05D001758 ORTHO05D004430 1.1e-33 146.4 93 80.6
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
ClCG01G002530 Citrullus lanatus HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
Dinv38922 Davidia involucrata HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 78.5
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 1.5e-33 146.0 93 80.6
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 2.0e-33 145.6 93 79.6
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 2.0e-33 145.6 93 79.6
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 2.0e-33 145.6 93 80.6
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 2.0e-33 145.6 93 78.5
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 2.6e-33 145.2 93 79.6
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 2.6e-33 145.2 93 79.6
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 2.6e-33 145.2 93 79.6
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 2.6e-33 145.2 93 79.6
Lj8A218T22 Lonicera japonica HOM05D001758 ORTHO05D004430 2.6e-33 145.2 93 79.6
TAR381G1011 Trochodendron aralioides HOM05D001758 ORTHO05D004430 2.6e-33 145.2 93 80.6
Cfa012203 Carpinus fangiana HOM05D001758 ORTHO05D004430 3.3e-33 144.8 93 79.6
Haze_08813 Corylus avellana HOM05D001758 ORTHO05D004430 3.3e-33 144.8 93 79.6
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 3.3e-33 144.8 93 78.5
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 4.4e-33 144.4 93 78.5
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 5.7e-33 144.1 93 79.6
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 5.7e-33 144.1 93 78.5
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 5.7e-33 144.1 93 78.5
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 5.7e-33 144.1 93 78.5
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 5.7e-33 144.1 93 78.5
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 5.7e-33 144.1 93 78.5
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 5.7e-33 144.1 93 78.5
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 5.7e-33 144.1 93 77.4
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 7.4e-33 143.7 93 79.6
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 7.4e-33 143.7 93 79.6
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 7.4e-33 143.7 93 78.5
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 9.7e-33 143.3 93 77.4
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 9.7e-33 143.3 93 79.6
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 9.7e-33 143.3 93 78.5
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 9.7e-33 143.3 93 76.3
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 9.7e-33 143.3 93 79.6
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 1.3e-32 142.9 93 78.5
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 1.3e-32 142.9 93 78.5
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 1.3e-32 142.9 93 77.4
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 1.3e-32 142.9 93 77.4
CSS0042527 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 78.5
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 77.4
DCAR_008367 Daucus carota HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 78.5
FvH4_5g02830 Fragaria vesca HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 77.4
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 77.4
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 77.4
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 78.5
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 77.4
Psat0s5381g0040 Pisum sativum HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 77.4
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 77.4
Sc01g0009710 Simmondsia chinensis HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 79.6
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 1.7e-32 142.5 93 77.4
Actinidia33743 Actinidia chinensis HOM05D001758 ORTHO05D004430 2.2e-32 142.1 93 78.5
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 2.2e-32 142.1 93 75.3
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 3.7e-32 141.4 93 78.5
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 3.7e-32 141.4 93 78.5
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 3.7e-32 141.4 93 77.4
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 4.8e-32 141.0 93 78.5
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 4.8e-32 141.0 93 76.3
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 4.8e-32 141.0 93 77.4
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 4.8e-32 141.0 93 76.3
Oeu042339.1 Olea europaea HOM05D001758 ORTHO05D004430 4.8e-32 141.0 93 77.4
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 6.3e-32 140.6 93 77.4
Lsat_1_v5_gn_6_5441 Lactuca sativa HOM05D001758 ORTHO05D004430 8.2e-32 140.2 93 78.5
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 1.4e-31 139.4 93 76.3
CDE08G1656 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 1.4e-31 139.4 93 76.3
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.4e-31 139.4 93 76.3
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 1.4e-31 139.4 93 77.4
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 1.4e-31 139.4 93 76.3
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 1.4e-31 139.4 93 77.4
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 1.4e-31 139.4 93 77.4
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 1.4e-31 139.4 93 75.3
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 1.8e-31 139.0 93 76.3
Ah.07g196400 Amaranthus hybridus HOM05D001758 ORTHO05D004430 2.4e-31 138.7 93 76.3
CAN.G968.9 Capsicum annuum HOM05D001758 ORTHO05D018856 2.4e-31 138.7 86 82.6
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 3.1e-31 138.3 93 76.3
unitig_62.g23539 Utricularia gibba HOM05D001758 ORTHO05D004430 3.1e-31 138.3 93 77.4
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.1e-31 137.9 89 78.7
CAN.G453.10 Capsicum annuum HOM05D001758 ORTHO05D018856 4.1e-31 137.9 87 80.5
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 4.1e-31 137.9 93 75.3
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 5.3e-31 137.5 93 76.3
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 5.3e-31 137.5 93 76.3
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 5.3e-31 137.5 93 76.3
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 7.0e-31 137.1 93 73.1
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 7.0e-31 137.1 112 68.8
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 7.0e-31 137.1 93 74.2
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 1.6e-30 136.0 93 75.3
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 2.0e-30 135.6 93 75.3
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 2.0e-30 135.6 93 75.3
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 2.0e-30 135.6 93 75.3
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 2.0e-30 135.6 93 75.3
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 2.0e-30 135.6 93 75.3
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 2.6e-30 135.2 93 73.1
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 3.5e-30 134.8 93 75.3
Gohir.A08G184050 Gossypium hirsutum HOM05D001758 ORTHO05D004430 3.5e-30 134.8 88 77.3
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 3.5e-30 134.8 93 74.2
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 5.9e-30 134.0 93 74.2
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 5.9e-30 134.0 93 74.2
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 5.9e-30 134.0 93 74.2
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 5.9e-30 134.0 93 74.2
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 7.7e-30 133.7 93 74.2
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 7.7e-30 133.7 93 74.2
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 7.7e-30 133.7 93 73.1
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 1.7e-29 132.5 93 74.2
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 1.7e-29 132.5 93 74.2
Mapoly0002s0295 Marchantia polymorpha HOM05D001758 ORTHO05D004430 1.7e-29 132.5 93 73.1
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 1.7e-29 132.5 93 73.1
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 2.2e-29 132.1 93 73.1
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 3.8e-29 131.3 93 73.1
Pp3c14_2460 Physcomitrium patens HOM05D001758 ORTHO05D004430 3.8e-29 131.3 93 71.0
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 5.0e-29 131.0 93 72.0
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 5.0e-29 131.0 93 72.0
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 5.0e-29 131.0 93 72.0
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 5.0e-29 131.0 93 72.0
Pp3c1_19340 Physcomitrium patens HOM05D001758 ORTHO05D004430 5.0e-29 131.0 93 69.9
AagrBONN_evm.TU.Sc2ySwM_117.2557 Anthoceros agrestis HOM05D001758 ORTHO05D004430 6.5e-29 130.6 93 72.0
Pp3c2_18140 Physcomitrium patens HOM05D001758 ORTHO05D004430 6.5e-29 130.6 93 69.9
CBR_g10902 Chara braunii HOM05D001758 ORTHO05D004430 8.5e-29 130.2 93 71.0
SMO298G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D004430 1.5e-28 129.4 93 71.0
Lj2C182T2 Lonicera japonica HOM05D001758 ORTHO05D004430 5.5e-28 127.5 93 71.0
Duzib068G1315 Durio zibethinus HOM05D001758 ORTHO05D004430 1.0e-26 123.2 89 69.7
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 2.3e-26 122.1 93 65.6
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 6.7e-26 120.6 134 53.0
CAN.G453.7 Capsicum annuum HOM05D001758 ORTHO05D004430 3.7e-24 114.8 79 73.4
MBI10_g48086_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 4.7e-19 97.8 93 59.1
MCO01G139 Micromonas commoda HOM05D001758 ORTHO05D004430 1.4e-18 96.3 95 53.7
Cpa.g.sc180.12 Carica papaya HOM05D001758 ORTHO05D004430 4.4e-17 91.3 60 76.7
MBI10_g48303_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 9.8e-17 90.1 93 55.9
Cfa025216 Carpinus fangiana HOM05D001758 ORTHO05D004430 6.3e-16 87.4 92 45.7
DCAR_005565 Daucus carota HOM05D001758 ORTHO05D004430 4.1e-15 84.7 60 70.0
SEGI_09797 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 7.0e-15 84.0 60 73.3
Psat6g071240 Pisum sativum HOM05D001758 ORTHO05D004430 2.7e-14 82.0 57 73.7
CAN.G849.9 Capsicum annuum HOM05D001758 ORTHO05D004430 3.5e-14 81.6 61 65.6
CAN.G458.13 Capsicum annuum HOM05D001758 ORTHO05D004430 7.7e-14 80.5 61 68.9
CAN.G205.21 Capsicum annuum HOM05D001758 ORTHO05D018856 6.5e-13 77.4 59 69.5
PRCOL_00003609 Prasinoderma coloniale HOM05D001758 ORTHO05D004430 1.9e-12 75.9 62 59.7
CAN.G849.10 Capsicum annuum HOM05D001758 ORTHO05D004430 5.5e-12 74.3 57 66.7
Cre11.g478156 Chlamydomonas reinhardtii HOM05D001758 ORTHO05D004430 2.8e-11 72.0 67 55.2
Lsat_1_v5_gn_8_132701 Lactuca sativa HOM05D001758 ORTHO05D228890 1.5e-09 66.2 55 58.2
Cfa024790 Carpinus fangiana HOM05D001758 ORTHO05D004430 7.0e-07 57.4 92 32.6
SEGI_36929 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 9.2e-07 57.0 57 56.1
Lsat_1_v5_gn_7_97200 Lactuca sativa HOM05D000746 ORTHO05D000573 1.6e-06 56.2 41 63.4
Actinidia27374 Actinidia chinensis HOM05D001758 ORTHO05D004430 2.0e-06 55.8 27 88.9


User provided reference genes

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