Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 8.0e-85 317.0 155 100.0
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 4.7e-61 238.0 122 94.3
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 6.8e-60 234.2 122 90.2
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 7.5e-59 230.7 122 89.3
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.1e-57 226.9 122 86.9
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 2.4e-57 225.7 122 86.9
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 2.4e-57 225.7 122 86.9
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.1e-46 190.3 122 72.1
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-46 190.3 122 71.3
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.9e-46 189.5 122 70.5
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.9e-46 189.5 122 70.5
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 4.3e-46 188.3 121 71.1
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 9.6e-46 187.2 122 69.7
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 1.3e-45 186.8 122 70.5
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 2.4e-44 182.6 122 70.5
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 4.0e-44 181.8 126 69.0
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 5.3e-44 181.4 122 70.5
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 5.3e-44 181.4 122 70.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.2e-43 180.3 122 69.7
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 2.0e-43 179.5 122 69.7
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 2.6e-43 179.1 122 68.9
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 2.6e-43 179.1 122 68.9
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 2.6e-43 179.1 122 68.9
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 2.6e-43 179.1 122 68.9
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 3.4e-43 178.7 122 67.2
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 5.8e-43 177.9 122 68.9
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 5.8e-43 177.9 122 65.6
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 5.8e-43 177.9 142 61.3
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 7.6e-43 177.6 122 68.0
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 9.9e-43 177.2 122 67.2
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.3e-42 176.8 127 65.4
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.3e-42 176.8 122 68.9
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 1.3e-42 176.8 120 68.3
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.3e-42 176.8 126 64.3
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.7e-42 176.4 122 68.0
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 2.9e-42 175.6 123 68.3
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 4.9e-42 174.9 122 68.0
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 6.4e-42 174.5 122 66.4
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 6.4e-42 174.5 122 66.4
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 8.4e-42 174.1 119 65.5
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 8.4e-42 174.1 119 67.2
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.4e-41 173.3 122 67.2
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 1.9e-41 172.9 121 65.3
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.4e-41 172.6 121 66.1
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 3.2e-41 172.2 121 66.9
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 5.4e-41 171.4 127 62.2
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 7.1e-41 171.0 122 64.8
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.1e-41 171.0 128 64.1
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 7.1e-41 171.0 123 65.9
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 7.1e-41 171.0 122 65.6
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.2e-40 170.2 119 64.7
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.6e-40 169.9 122 68.0
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.6e-40 169.9 120 65.0
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 2.1e-40 169.5 122 63.1
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 2.1e-40 169.5 120 66.7
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 2.7e-40 169.1 122 64.8
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 2.7e-40 169.1 119 66.4
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 2.7e-40 169.1 121 63.6
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 2.7e-40 169.1 121 66.1
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.5e-40 168.7 122 64.8
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 3.5e-40 168.7 122 63.1
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 4.6e-40 168.3 130 63.8
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.0e-40 167.9 122 66.4
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 6.0e-40 167.9 120 62.5
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 7.8e-40 167.5 122 65.6
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.0e-39 167.2 122 61.5
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.3e-39 166.8 125 56.0
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.7e-39 166.4 121 65.3
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.7e-39 166.4 121 62.0
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 1.7e-39 166.4 122 63.9
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.3e-39 166.0 122 66.4
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.3e-39 166.0 122 64.8
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 3.0e-39 165.6 122 61.5
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 5.1e-39 164.9 122 63.9
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 5.1e-39 164.9 118 66.1
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 8.7e-39 164.1 122 60.7
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.5e-38 163.3 122 59.8
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.5e-38 163.3 120 63.3
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 1.9e-38 162.9 122 62.3
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.9e-38 162.9 122 63.9
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 3.3e-38 162.2 120 60.0
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.3e-38 161.8 117 65.8
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 5.6e-38 161.4 108 66.7
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 7.3e-38 161.0 108 69.4
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 7.3e-38 161.0 120 61.7
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 9.6e-38 160.6 117 60.7
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.3e-37 160.2 120 62.5
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 2.8e-37 159.1 120 60.0
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.8e-37 159.1 147 57.1
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 3.6e-37 158.7 115 62.6
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 2.4e-36 156.0 120 59.2
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 5.3e-36 154.8 119 60.5
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 6.9e-36 154.5 120 60.8
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 9.0e-36 154.1 119 59.7
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 9.0e-36 154.1 123 57.7
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 5.8e-35 151.4 107 65.4
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 3.8e-34 148.7 114 60.5
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 6.4e-34 147.9 107 65.4
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 1.1e-33 147.1 106 67.9
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 2.4e-33 146.0 116 56.0
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 5.4e-33 144.8 117 54.7
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 7.1e-33 144.4 118 55.1
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 7.1e-33 144.4 94 67.0
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.1e-33 144.4 97 68.0
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.7e-32 142.5 104 62.5
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 2.7e-32 142.5 88 71.6
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 3.5e-32 142.1 117 62.4
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.5e-32 142.1 97 67.0
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 4.6e-32 141.7 108 58.3
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.0e-31 140.6 120 53.3
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 6.7e-31 137.9 83 72.3
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 2.0e-27 126.3 106 55.7
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.5e-25 119.4 85 67.1
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 3.0e-23 112.5 121 43.0
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 6.7e-23 111.3 81 59.3
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.1e-22 110.5 119 42.0
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 5.3e-20 101.7 126 42.9
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 3.4e-19 99.0 63 69.8
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 2.9e-18 95.9 56 75.0
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 8.4e-18 94.4 55 76.4
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 3.2e-17 92.4 55 72.7
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.2e-17 92.4 55 74.5
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 5.5e-17 91.7 126 37.3
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 9.3e-17 90.9 55 74.5
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.1e-12 77.4 65 55.4
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 3.2e-09 65.9 35 88.6
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 3.6e-08 62.4 33 81.8
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.8e-07 60.1 76 35.5
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.3e-07 59.7 34 73.5
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.0e-07 59.3 40 62.5
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 5.7e-06 55.1 36 61.1
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 9.7e-06 54.3 33 66.7


User provided reference genes

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