Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 5.2e-307 1057.0 570 100.0
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 2.8e-276 954.9 518 100.0
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 3.0e-270 934.9 518 97.9
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 1.1e-253 879.8 520 93.1
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 3.4e-250 868.2 520 87.5
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 5.3e-235 817.8 527 80.5
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.6e-231 806.2 527 83.9
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 7.2e-224 780.8 525 77.9
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 8.0e-223 777.3 526 81.7
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 1.1e-216 756.9 525 79.2
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 1.8e-214 749.6 527 75.5
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 3.8e-201 705.3 547 68.4
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 9.5e-184 647.5 401 90.8
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 8.8e-121 438.3 532 47.6
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 3.7e-119 433.0 528 47.5
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 6.9e-118 428.7 522 46.0
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 2.6e-117 426.8 523 47.2
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.7e-116 424.1 547 43.1
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 5.0e-116 422.5 533 44.3
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 1.8e-113 414.1 524 45.6
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 1.7e-111 407.5 558 41.9
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 2.2e-111 407.1 576 41.0
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 1.4e-110 404.4 542 43.4
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 2.4e-110 403.7 517 45.6
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 3.1e-110 403.3 537 42.8
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 4.1e-110 402.9 546 42.5
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 1.2e-109 401.4 541 42.0
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 3.8e-108 396.4 546 42.3
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 3.8e-108 396.4 541 43.3
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 5.0e-108 396.0 526 43.5
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 8.5e-108 395.2 526 43.5
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 1.9e-107 394.0 585 41.4
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 7.2e-107 392.1 525 44.8
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 7.2e-107 392.1 541 42.0
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 9.4e-107 391.7 557 40.2
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 2.1e-106 390.6 580 42.1
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 2.7e-106 390.2 690 36.2
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 2.3e-105 387.1 596 40.3
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 5.2e-105 386.0 528 42.6
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 5.2e-105 386.0 551 40.5
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.5e-104 384.4 534 43.8
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 2.0e-104 384.0 558 42.5
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.0e-104 384.0 528 43.9
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 3.3e-104 383.3 528 42.2
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 9.7e-104 381.7 571 42.4
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 8.2e-103 378.6 545 41.5
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 1.1e-102 378.3 551 40.8
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.4e-102 377.1 550 40.2
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 5.3e-102 375.9 529 41.8
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 9.1e-102 375.2 532 42.9
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 9.1e-102 375.2 521 41.3
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 5.9e-101 372.5 524 41.8
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.7e-100 370.9 557 40.2
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 8.5e-100 368.6 558 40.5
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 8.5e-100 368.6 547 39.9
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 4.2e-99 366.3 529 40.5
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 5.5e-99 365.9 566 38.7
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.1e-98 364.0 568 38.4
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 2.7e-98 363.6 560 41.6
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 3.6e-98 363.2 522 40.8
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 1.2e-96 358.2 522 40.0
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 2.0e-96 357.5 565 40.5
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 2.0e-96 357.5 581 37.9
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 8.3e-95 352.1 570 38.9
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 1.6e-93 347.8 522 40.0
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 1.9e-91 340.9 518 39.8
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 1.2e-90 338.2 517 39.5
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 3.6e-90 336.7 533 39.8
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.0e-89 335.1 558 38.0
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 5.2e-89 332.8 525 40.2
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 1.2e-88 331.6 529 39.1
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.6e-88 330.5 568 36.3
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 2.6e-88 330.5 593 35.8
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 1.3e-87 328.2 552 35.9
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 5.0e-84 316.2 683 34.0
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 4.3e-83 313.2 460 47.0
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 2.1e-82 310.8 502 39.0
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 1.5e-80 304.7 534 36.9
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 1.5e-80 304.7 531 37.1
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 7.5e-80 302.4 532 37.6
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 4.9e-79 299.7 566 35.3
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 5.9e-77 292.7 551 35.8
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 4.3e-75 286.6 466 38.0
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 4.7e-74 283.1 580 33.8
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 1.8e-73 281.2 549 33.7
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 3.1e-73 280.4 467 36.6
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 1.2e-72 278.5 456 36.2
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 1.0e-68 265.4 491 35.6
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.7e-68 264.6 508 35.8
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.1e-66 257.7 486 34.2
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 5.8e-64 249.6 586 31.2
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 7.8e-61 239.2 207 54.6
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 9.9e-56 222.2 435 37.7
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 1.7e-55 221.5 467 33.6
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 6.6e-52 209.5 400 36.2
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 2.5e-51 207.6 194 51.0
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 6.9e-49 199.5 387 36.7
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 8.4e-47 192.6 464 36.6
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.4e-46 191.0 149 60.4
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.6e-45 188.3 149 59.7
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 1.0e-44 185.7 213 46.9
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.4e-41 175.3 438 31.7
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 6.9e-41 172.9 470 29.1
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 6.9e-41 172.9 530 28.3
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 3.5e-37 160.6 590 27.6
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.3e-36 158.7 421 30.4
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 5.1e-36 156.8 119 60.5
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 1.3e-34 152.1 140 50.0
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 1.4e-30 138.7 346 31.5
BcaNung05241 Brassica carinata HOM05D006560 ORTHO05D008164 2.3e-28 131.3 126 83.3
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 1.5e-27 128.6 355 31.5
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 3.7e-26 124.0 122 48.4
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.0e-23 115.9 315 34.0
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 3.9e-20 104.0 111 52.3
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 5.5e-14 83.6 193 30.1
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.8e-12 78.6 142 32.4
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 1.7e-10 72.0 63 61.9
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.7e-10 70.9 48 60.4
Dinv24123 Davidia involucrata HOM05D006560 ORTHO05D008164 1.0e-07 62.8 30 83.3
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 4.2e-06 57.4 54 51.9


User provided reference genes

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