Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p47800 Brassica napus HOM05D005073 ORTHO05D006166 3.3e-101 371.7 184 100.0
C05p36400 Brassica napus HOM05D005073 ORTHO05D006166 1.2e-92 343.2 187 91.4
C08p22880 Brassica napus HOM05D005073 ORTHO05D006166 1.6e-92 342.8 191 91.6
BolC8t49924H Brassica oleracea HOM05D005073 ORTHO05D006166 1.6e-92 342.8 191 91.6
BcaC05g27652 Brassica carinata HOM05D005073 ORTHO05D006166 1.4e-91 339.7 189 91.0
BolC7t40457H Brassica oleracea HOM05D005073 ORTHO05D006166 9.8e-90 333.6 188 88.8
A03p65370 Brassica napus HOM05D005073 ORTHO05D006166 6.4e-89 330.9 180 92.8
BraA03t15591Z Brassica rapa HOM05D005073 ORTHO05D006166 6.4e-89 330.9 180 92.8
BcaC06g36777 Brassica carinata HOM05D005073 ORTHO05D006166 7.0e-88 327.4 184 88.6
BolC7t40456H Brassica oleracea HOM05D005073 ORTHO05D006166 1.5e-85 319.7 184 88.0
BcaC07g39279 Brassica carinata HOM05D005073 ORTHO05D006166 3.5e-79 298.5 167 90.4
A09p41080 Brassica napus HOM05D005073 ORTHO05D006166 2.3e-75 285.8 149 91.9
BraA09t39601Z Brassica rapa HOM05D005073 ORTHO05D006166 1.2e-58 230.3 119 91.6
A04p08580 Brassica napus HOM05D005073 ORTHO05D006166 1.9e-56 223.0 123 90.2
BraA04t16552Z Brassica rapa HOM05D005073 ORTHO05D006166 1.9e-56 223.0 123 90.2
BcaC06g36780 Brassica carinata HOM05D005073 ORTHO05D094611 2.6e-42 176.0 91 95.6
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 2.1e-39 166.4 171 58.5
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 9.6e-37 157.5 171 57.9
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 8.2e-36 154.5 171 57.3
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 3.1e-35 152.5 171 56.1
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 4.1e-35 152.1 171 54.4
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 4.1e-35 152.1 173 56.1
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 4.5e-34 148.7 174 54.6
Carub.0002s2490 Capsella rubella HOM05D005073 ORTHO05D006166 2.2e-33 146.4 171 55.6
CARHR071470 Cardamine hirsuta HOM05D005073 ORTHO05D006166 2.5e-32 142.9 171 53.8
SGA_v2.0_scaffold48G18021 Striga asiatica HOM05D005073 ORTHO05D006166 1.3e-28 130.6 171 49.1
SGA_v2.0_scaffold24G10294 Striga asiatica HOM05D005073 ORTHO05D006166 2.2e-28 129.8 171 48.5
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 4.8e-28 128.6 176 48.3
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 8.2e-28 127.9 173 48.0
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 8.2e-28 127.9 171 47.4
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 1.8e-27 126.7 171 49.7
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 1.8e-27 126.7 169 47.9
Atru.chr13.1265 Acer truncatum HOM05D005073 ORTHO05D006166 2.4e-27 126.3 171 48.0
Gohir.D05G231700 Gossypium hirsutum HOM05D005073 ORTHO05D006166 2.4e-27 126.3 171 49.7
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 2.4e-27 126.3 171 49.7
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 3.1e-27 125.9 175 48.6
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 4.1e-27 125.6 171 48.0
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 6.9e-27 124.8 171 46.2
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 1.5e-26 123.6 154 51.9
PGR044G0799 Punica granatum HOM05D005073 ORTHO05D006166 1.5e-26 123.6 171 46.2
Sabra02G0073100 Salix brachista HOM05D005073 ORTHO05D006166 2.6e-26 122.9 180 45.0
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 4.5e-26 122.1 171 48.0
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 5.9e-26 121.7 171 48.0
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 5.9e-26 121.7 171 46.8
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 5.9e-26 121.7 171 46.8
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 5.9e-26 121.7 171 49.7
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 5.9e-26 121.7 171 48.5
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 1.0e-25 120.9 153 51.0
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 1.0e-25 120.9 171 46.8
Sc12g0004230 Simmondsia chinensis HOM05D005073 ORTHO05D006166 1.0e-25 120.9 172 46.5
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 1.3e-25 120.6 171 48.0
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 1.3e-25 120.6 183 45.4
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 1.3e-25 120.6 171 46.8
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 1.7e-25 120.2 171 45.6
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 1.7e-25 120.2 171 48.5
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 2.2e-25 119.8 175 45.1
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 2.2e-25 119.8 171 45.0
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 2.9e-25 119.4 180 45.0
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 3.8e-25 119.0 171 43.9
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 3.8e-25 119.0 136 52.9
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 3.8e-25 119.0 171 47.4
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 5.0e-25 118.6 171 46.8
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 5.0e-25 118.6 171 48.0
Glyma.04G105000 Glycine max HOM05D005073 ORTHO05D006166 6.5e-25 118.2 171 45.6
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 6.5e-25 118.2 173 46.8
Potri.002G092600 Populus trichocarpa HOM05D005073 ORTHO05D006166 6.5e-25 118.2 171 46.2
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 8.5e-25 117.9 154 50.0
CAN.G517.17 Capsicum annuum HOM05D005073 ORTHO05D006166 1.1e-24 117.5 171 46.2
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 1.1e-24 117.5 171 46.2
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 1.1e-24 117.5 171 45.0
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 1.4e-24 117.1 171 45.0
Dinv44743 Davidia involucrata HOM05D005073 ORTHO05D006166 1.4e-24 117.1 171 45.6
Phvul.009G028601 Phaseolus vulgaris HOM05D005073 ORTHO05D006166 1.4e-24 117.1 171 45.0
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 1.9e-24 116.7 171 43.9
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 1.9e-24 116.7 171 44.4
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 2.5e-24 116.3 171 46.2
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 2.5e-24 116.3 171 46.2
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 2.5e-24 116.3 171 46.8
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 2.5e-24 116.3 138 50.0
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 2.5e-24 116.3 171 46.2
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 3.2e-24 115.9 171 46.8
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 4.2e-24 115.5 171 46.8
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 4.2e-24 115.5 171 44.4
Hma1.2p1_0120F.1_g057030 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 4.2e-24 115.5 173 46.8
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 4.2e-24 115.5 171 44.4
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 5.5e-24 115.2 171 44.4
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 5.5e-24 115.2 171 42.7
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 7.2e-24 114.8 171 45.0
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 9.4e-24 114.4 137 50.4
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 9.4e-24 114.4 171 44.4
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 1.2e-23 114.0 171 45.6
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 1.2e-23 114.0 171 44.4
Ah.16g109530 Amaranthus hybridus HOM05D005073 ORTHO05D006166 1.6e-23 113.6 165 44.8
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 1.6e-23 113.6 171 45.6
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 2.7e-23 112.8 137 51.8
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 2.7e-23 112.8 171 43.9
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 4.6e-23 112.1 171 43.3
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 6.1e-23 111.7 133 52.6
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 6.1e-23 111.7 175 41.1
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 7.9e-23 111.3 171 45.0
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 7.9e-23 111.3 175 41.7
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 7.9e-23 111.3 139 46.8
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 1.0e-22 110.9 133 51.9
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 1.0e-22 110.9 171 42.1
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 2.3e-22 109.8 171 42.1
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 3.0e-22 109.4 171 42.7
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 3.9e-22 109.0 168 43.5
Mapoly0034s0014 Marchantia polymorpha HOM05D005073 ORTHO05D006166 6.7e-22 108.2 175 41.1
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 6.7e-22 108.2 175 41.1
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 1.1e-21 107.5 140 46.4
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 7.4e-21 104.8 162 43.2
Pp3c13_12510 Physcomitrium patens HOM05D005073 ORTHO05D006166 6.3e-20 101.7 175 37.7
Pp3c13_12516 Physcomitrium patens HOM05D005073 ORTHO05D006166 6.3e-20 101.7 175 37.7
CBR_g9146 Chara braunii HOM05D005073 ORTHO05D006166 1.8e-19 100.1 175 38.3
AagrBONN_evm.TU.Sc2ySwM_228.2622 Anthoceros agrestis HOM05D005073 ORTHO05D006166 1.2e-18 97.4 145 42.8
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 3.4e-18 95.9 151 44.4
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 4.5e-18 95.5 106 50.9
C07p00040 Brassica napus HOM05D005073 ORTHO05D006166 1.0e-17 94.4 49 85.7
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 2.2e-17 93.2 175 40.0
C07p00050 Brassica napus HOM05D005073 ORTHO05D006166 5.0e-17 92.0 49 83.7
QL12p035939 Quercus lobata HOM05D005073 ORTHO05D006166 6.5e-17 91.7 108 47.2
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 2.5e-16 89.7 117 47.0
SMO137G0212 Selaginella moellendorffii HOM05D005073 ORTHO05D006166 4.7e-15 85.5 151 35.1
PRCOL_00000127 Prasinoderma coloniale HOM05D005073 ORTHO05D006166 3.3e-13 79.3 135 37.8
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 7.4e-13 78.2 110 47.3
Cre16.g681238 Chlamydomonas reinhardtii HOM05D005073 ORTHO05D006166 3.7e-12 75.9 140 35.0
BraA10t43482Z Brassica rapa HOM05D018368 ORTHO05D015496 1.0e-06 57.8 52 55.8
MCO14G420 Micromonas commoda HOM05D005073 ORTHO05D006166 1.8e-06 57.0 198 28.3


User provided reference genes

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