Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 1.6e-126 456.1 230 100.0
BolC9t57557H Brassica oleracea HOM05D036241 ORTHO05D032846 5.4e-69 265.0 133 99.2
BcaC04g20170 Brassica carinata HOM05D036241 ORTHO05D032846 8.6e-67 257.7 133 96.2
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 1.9e-18 97.1 75 68.0
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 1.9e-18 97.1 75 68.0
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 7.3e-18 95.1 75 68.0
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 1.3e-17 94.4 75 66.7
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 2.8e-17 93.2 75 66.7
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 2.8e-17 93.2 75 66.7
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 2.8e-17 93.2 75 66.7
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 4.8e-17 92.4 75 65.3
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 4.8e-17 92.4 73 67.1
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 4.8e-17 92.4 73 67.1
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 4.8e-17 92.4 73 67.1
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 1.1e-16 91.3 75 65.3
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 1.4e-16 90.9 73 65.8
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 1.4e-16 90.9 77 61.0
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 2.4e-16 90.1 77 59.7
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 2.4e-16 90.1 77 61.0
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 2.4e-16 90.1 73 65.8
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 9.0e-16 88.2 77 59.7
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 9.0e-16 88.2 77 59.7
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 9.0e-16 88.2 77 59.7
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 9.0e-16 88.2 77 59.7
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 9.0e-16 88.2 77 59.7
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 9.0e-16 88.2 77 59.7
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.2e-15 87.8 143 40.6
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 1.2e-15 87.8 77 61.0
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 1.2e-15 87.8 77 61.0
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 1.5e-15 87.4 77 59.7
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.5e-15 87.4 77 58.4
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.5e-15 87.4 93 51.6
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.5e-15 87.4 77 58.4
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.0e-15 87.0 73 63.0
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.0e-15 87.0 77 58.4
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.0e-15 87.0 143 39.9
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 2.0e-15 87.0 77 58.4
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 3.4e-15 86.3 73 61.6
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 4.5e-15 85.9 77 57.1
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 7.6e-15 85.1 77 57.1
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 7.6e-15 85.1 143 38.5
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 9.9e-15 84.7 143 39.2
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 1.3e-14 84.3 77 58.4
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 1.3e-14 84.3 73 61.6
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 1.7e-14 84.0 77 57.1
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 2.2e-14 83.6 73 58.9
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 2.2e-14 83.6 143 37.8
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 2.2e-14 83.6 77 58.4
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.2e-14 83.6 143 38.5
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 2.9e-14 83.2 143 39.2
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 2.9e-14 83.2 75 58.7
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 2.9e-14 83.2 75 57.3
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 2.9e-14 83.2 77 57.1
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 3.8e-14 82.8 77 55.8
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 3.8e-14 82.8 77 57.1
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 4.9e-14 82.4 73 57.5
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 4.9e-14 82.4 77 55.8
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 4.9e-14 82.4 89 50.6
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 4.9e-14 82.4 77 54.5
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 4.9e-14 82.4 77 54.5
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 4.9e-14 82.4 77 55.8
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 6.4e-14 82.0 143 37.8
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 6.4e-14 82.0 77 57.1
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 8.4e-14 81.6 77 55.8
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 8.4e-14 81.6 77 55.8
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.1e-13 81.3 143 39.2
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 1.4e-13 80.9 77 54.5
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 1.9e-13 80.5 73 57.5
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 1.9e-13 80.5 77 57.1
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 1.9e-13 80.5 143 37.8
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 3.2e-13 79.7 143 38.5
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 3.2e-13 79.7 77 55.8
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 3.2e-13 79.7 77 55.8
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 3.2e-13 79.7 77 55.8
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 4.2e-13 79.3 77 53.2
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 4.2e-13 79.3 77 54.5
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 4.2e-13 79.3 77 54.5
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 4.2e-13 79.3 77 54.5
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 4.2e-13 79.3 143 36.4
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 4.2e-13 79.3 77 55.8
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 5.4e-13 79.0 77 54.5
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 5.4e-13 79.0 143 37.8
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 5.4e-13 79.0 143 35.0
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 9.3e-13 78.2 77 53.2
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 1.2e-12 77.8 77 54.5
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 1.6e-12 77.4 143 37.1
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.6e-12 77.4 91 46.2
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 3.5e-12 76.3 143 36.4
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 3.5e-12 76.3 143 37.1
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 4.6e-12 75.9 77 50.6
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 2.3e-11 73.6 73 54.8
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 3.0e-11 73.2 59 62.7
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 3.9e-11 72.8 77 46.8
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 7.4e-10 68.6 151 33.8
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 9.6e-10 68.2 109 38.5
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 9.6e-10 68.2 109 38.5
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 9.6e-10 68.2 109 38.5
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 1.3e-09 67.8 63 55.6
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.3e-09 67.8 73 50.7
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 4.8e-09 65.9 106 38.7
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 6.2e-09 65.5 73 50.7
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 4.0e-08 62.8 74 48.6
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 2.0e-07 60.5 48 62.5
AT5G55310 Arabidopsis thaliana HOM05D002795 ORTHO05D003219 2.6e-07 60.1 62 51.6
AL8G30840 Arabidopsis lyrata HOM05D002795 ORTHO05D003219 3.4e-07 59.7 62 51.6
AL8G30850 Arabidopsis lyrata HOM05D002795 ORTHO05D003219 3.4e-07 59.7 62 51.6
AT5G55300 Arabidopsis thaliana HOM05D002795 ORTHO05D003219 3.4e-07 59.7 62 51.6
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 3.4e-07 59.7 73 43.8
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 4.5e-07 59.3 178 29.2
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.5e-07 59.3 39 69.2
Carub.0008s1563 Capsella rubella HOM05D002795 ORTHO05D003219 1.3e-06 57.8 62 51.6
Carub.0008s1565 Capsella rubella HOM05D002795 ORTHO05D003219 1.3e-06 57.8 62 50.0
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.3e-06 57.8 138 29.7
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.3e-06 57.8 138 29.7
BcaB05g22198 Brassica carinata HOM05D002795 ORTHO05D003219 1.7e-06 57.4 65 47.7
CARHR204420 Cardamine hirsuta HOM05D002795 ORTHO05D003219 2.2e-06 57.0 62 46.8
CARHR268670 Cardamine hirsuta HOM05D002795 ORTHO05D003219 2.2e-06 57.0 62 50.0
Thhalv10012622m.g Eutrema salsugineum HOM05D002795 ORTHO05D003219 2.9e-06 56.6 62 50.0
Sp6g17230 Schrenkiella parvula HOM05D002795 ORTHO05D003219 2.9e-06 56.6 62 50.0
THA.LOC104817691 Tarenaya hassleriana HOM05D002795 ORTHO05D003219 2.9e-06 56.6 62 50.0
CARHR234320 Cardamine hirsuta HOM05D002795 ORTHO05D003219 3.8e-06 56.2 62 48.4
Thhalv10012607m.g Eutrema salsugineum HOM05D002795 ORTHO05D003219 3.8e-06 56.2 66 45.5
SGA_v2.0_scaffold10G05160 Striga asiatica HOM05D002795 ORTHO05D003219 3.8e-06 56.2 77 42.9
CARHR268650 Cardamine hirsuta HOM05D002795 ORTHO05D003219 4.9e-06 55.8 62 50.0
Manes.15G065000 Manihot esculenta HOM05D002795 ORTHO05D003219 6.4e-06 55.5 66 47.0
Aa31LG3G11270 Aethionema arabicum HOM05D002795 ORTHO05D003219 8.4e-06 55.1 62 48.4
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 8.4e-06 55.1 99 34.3


User provided reference genes

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