Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 0.0e+00 1259.2 744 100.0
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 0.0e+00 1221.8 746 98.1
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 0.0e+00 1190.3 750 93.3
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 0.0e+00 1187.9 750 93.1
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 0.0e+00 1173.7 743 92.9
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 0.0e+00 1156.0 744 91.8
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 0.0e+00 1137.9 744 89.5
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 0.0e+00 1129.4 744 88.8
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 0.0e+00 1111.3 746 85.5
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 0.0e+00 1109.0 748 87.8
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 0.0e+00 1090.9 747 89.4
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 0.0e+00 1075.5 726 85.7
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 1.0e-311 1072.8 748 80.7
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 2.4e-288 995.3 751 71.4
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 1.7e-281 972.6 758 73.0
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 2.4e-280 968.8 659 77.5
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.7e-279 965.3 756 74.1
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 4.6e-279 964.5 655 77.6
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 7.8e-279 963.8 653 76.1
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 1.7e-278 962.6 804 66.2
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 1.1e-277 959.9 756 69.8
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.3e-277 958.4 652 77.0
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.2e-276 956.4 652 76.7
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 4.7e-276 954.5 652 76.4
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 6.2e-276 954.1 652 75.0
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 3.1e-275 951.8 757 70.7
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 6.9e-275 950.7 659 76.2
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 2.0e-274 949.1 638 77.3
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 2.6e-274 948.7 654 74.9
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 4.4e-274 948.0 749 68.1
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 7.6e-274 947.2 658 76.4
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 9.9e-274 946.8 741 70.7
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 1.3e-273 946.4 647 76.5
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 4.9e-273 944.5 638 78.1
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 6.4e-273 944.1 539 86.1
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 4.2e-272 941.4 650 75.5
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 5.4e-272 941.0 745 69.0
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 7.1e-272 940.6 640 76.1
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 1.2e-271 939.9 644 76.1
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 2.7e-271 938.7 757 68.4
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 7.8e-271 937.2 738 70.6
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 5.1e-270 934.5 649 75.2
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 6.6e-270 934.1 759 68.1
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 8.7e-270 933.7 668 74.4
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 4.3e-269 931.4 656 76.5
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 3.6e-268 928.3 646 74.9
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.4e-267 926.4 654 73.9
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 3.1e-267 925.2 654 76.3
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 3.1e-267 925.2 687 71.3
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 5.8e-266 921.0 649 75.7
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.8e-266 921.0 649 75.7
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 9.9e-266 920.2 640 75.5
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.8e-265 918.3 633 77.1
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.1e-264 916.8 646 73.7
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 1.9e-264 916.0 661 74.9
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 2.4e-264 915.6 661 74.3
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.6e-263 912.9 653 73.7
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 2.1e-263 912.5 669 71.9
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 6.0e-263 911.0 587 77.5
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 2.3e-262 909.1 659 73.7
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 6.7e-262 907.5 740 67.4
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 8.7e-262 907.1 661 73.2
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.9e-261 906.0 651 73.6
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 3.3e-261 905.2 659 73.6
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 1.3e-260 903.3 638 75.9
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 4.8e-260 901.4 646 73.2
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 8.1e-260 900.6 724 68.6
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.4e-259 899.0 653 70.8
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 9.0e-259 897.1 647 71.1
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.0e-258 896.0 661 72.0
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 5.8e-258 894.4 586 77.1
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 3.8e-257 891.7 702 68.7
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 3.8e-257 891.7 752 67.2
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 1.1e-256 890.2 674 70.0
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 4.2e-256 888.3 517 83.2
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 7.1e-256 887.5 651 71.7
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 4.8e-252 874.8 605 76.4
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 4.8e-252 874.8 687 68.0
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.3e-249 866.7 653 69.2
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 7.1e-248 860.9 585 76.2
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 1.6e-247 859.8 643 69.5
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 4.6e-247 858.2 650 68.0
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 1.0e-246 857.1 650 69.2
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.0e-246 855.5 641 73.0
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 3.9e-246 855.1 643 69.5
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 7.4e-245 850.9 496 83.1
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.2e-242 843.6 643 67.7
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 7.7e-242 840.9 646 67.5
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.1e-237 827.0 664 69.1
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 4.3e-237 825.1 636 70.3
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 4.8e-236 821.6 659 69.8
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 3.7e-228 795.4 545 72.7
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 2.4e-227 792.7 646 68.9
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.5e-224 782.7 530 77.4
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 8.8e-222 774.2 668 61.2
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.3e-220 768.1 644 67.2
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 9.4e-216 754.2 658 61.4
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.6e-215 753.4 587 64.7
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 5.0e-209 731.9 640 62.2
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 9.8e-205 717.6 523 67.3
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.4e-195 686.4 427 78.7
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.6e-183 647.1 365 84.4
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.6e-175 620.5 606 53.3
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 4.0e-166 589.3 490 58.4
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 6.8e-166 588.6 661 54.9
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.3e-164 584.3 494 57.7
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 8.7e-161 571.6 392 72.4
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.0e-153 548.1 427 71.7
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.9e-140 502.7 458 63.8
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 4.1e-126 456.4 526 46.6
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 3.0e-121 440.3 530 50.8
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 8.8e-121 438.7 550 45.8
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.5e-120 438.0 254 79.1
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 4.5e-109 399.8 544 43.6
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.6e-98 364.8 544 37.7
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.7e-98 363.2 238 74.4
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 2.2e-92 344.4 182 87.9
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.8e-86 324.7 263 63.5
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 4.7e-82 310.1 292 65.1
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 5.8e-72 276.6 157 80.9
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.8e-58 231.1 172 65.7
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 8.9e-49 199.5 266 54.5
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.9e-39 167.2 121 70.2
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.4e-38 163.7 200 56.5
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.1e-37 161.8 188 58.5
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.6e-35 153.7 204 48.5
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 4.6e-29 134.0 90 74.4
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.0e-25 119.8 76 82.9
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 8.4e-23 113.2 200 47.0
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.1e-18 98.6 202 59.4
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 3.8e-15 87.8 115 47.0
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.8e-10 70.9 195 33.8
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 3.2e-06 58.2 120 48.3


User provided reference genes

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