Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 1.3e-63 246.1 112 100.0
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 1.3e-63 246.1 112 100.0
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 3.7e-63 244.6 112 99.1
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.7e-60 235.7 112 95.5
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.7e-60 235.7 112 95.5
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.2e-53 213.0 112 84.8
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 2.6e-53 211.8 112 83.9
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.4e-53 211.5 112 83.9
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.8e-53 210.7 112 83.9
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 6.5e-52 207.2 112 83.0
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.1e-51 206.5 112 83.0
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.1e-51 206.5 112 83.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.1e-51 206.5 112 83.0
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 3.2e-51 204.9 112 82.1
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 3.2e-51 204.9 112 82.1
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 3.2e-51 204.9 112 82.1
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.2e-51 204.5 112 82.1
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 5.5e-51 204.1 112 80.4
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 7.1e-51 203.8 112 81.2
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 7.1e-51 203.8 112 78.6
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 1.2e-50 203.0 112 79.5
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.1e-50 202.2 112 80.4
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 2.7e-50 201.8 112 80.4
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 2.7e-50 201.8 112 80.4
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 2.7e-50 201.8 112 80.4
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 2.7e-50 201.8 112 80.4
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 3.5e-50 201.4 112 77.7
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 3.5e-50 201.4 112 77.7
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 6.0e-50 200.7 112 78.6
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 6.0e-50 200.7 112 77.7
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 6.0e-50 200.7 112 76.8
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 6.0e-50 200.7 112 76.8
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 6.0e-50 200.7 112 77.7
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 6.0e-50 200.7 112 76.8
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 7.9e-50 200.3 112 75.0
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 7.9e-50 200.3 112 78.6
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.0e-49 199.9 112 76.8
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.0e-49 199.9 111 77.5
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.0e-49 199.9 112 76.8
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 1.3e-49 199.5 112 77.7
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 1.3e-49 199.5 112 76.8
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.3e-49 199.5 112 76.8
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.3e-49 199.5 112 75.9
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.8e-49 199.1 112 76.8
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 1.8e-49 199.1 112 77.7
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.8e-49 199.1 111 76.6
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 1.8e-49 199.1 112 76.8
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 2.3e-49 198.7 112 77.7
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 2.3e-49 198.7 112 75.9
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 2.3e-49 198.7 112 77.7
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 2.3e-49 198.7 112 77.7
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 3.0e-49 198.4 112 75.9
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 3.0e-49 198.4 112 76.8
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 3.0e-49 198.4 112 76.8
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 3.0e-49 198.4 112 75.9
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 3.9e-49 198.0 112 75.9
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 3.9e-49 198.0 112 75.9
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 5.1e-49 197.6 112 75.0
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 5.1e-49 197.6 112 75.9
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 5.1e-49 197.6 112 75.9
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 6.7e-49 197.2 112 76.8
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 6.7e-49 197.2 112 76.8
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 6.7e-49 197.2 112 75.0
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 6.7e-49 197.2 112 77.7
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 6.7e-49 197.2 112 75.9
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 8.7e-49 196.8 112 75.0
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 8.7e-49 196.8 112 76.8
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.1e-48 196.4 112 75.9
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.1e-48 196.4 112 75.9
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.1e-48 196.4 112 75.9
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.1e-48 196.4 112 75.9
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.1e-48 196.4 112 75.9
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 1.5e-48 196.1 112 76.8
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.5e-48 196.1 112 76.8
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.5e-48 196.1 112 76.8
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 1.5e-48 196.1 112 76.8
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.5e-48 196.1 112 77.7
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.9e-48 195.7 112 75.0
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.9e-48 195.7 112 73.2
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.5e-48 195.3 112 74.1
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 2.5e-48 195.3 112 75.9
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 2.5e-48 195.3 112 75.0
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 3.3e-48 194.9 112 75.9
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.3e-48 194.9 112 75.9
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.3e-48 194.9 112 75.9
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 4.3e-48 194.5 112 75.9
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 4.3e-48 194.5 112 75.9
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 9.7e-48 193.4 112 74.1
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 9.7e-48 193.4 112 75.9
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 1.3e-47 193.0 112 74.1
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.6e-47 192.6 112 75.0
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 4.8e-47 191.0 112 75.0
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 4.8e-47 191.0 112 74.1
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 4.8e-47 191.0 132 66.7
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 6.3e-47 190.7 112 72.3
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.4e-46 189.5 105 81.9
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 4.1e-46 188.0 105 81.0
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 3.4e-45 184.9 105 79.0
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.4e-45 184.9 131 64.9
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 1.3e-44 183.0 112 72.3
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.3e-44 183.0 112 72.3
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.3e-44 183.0 112 72.3
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 3.8e-44 181.4 105 75.2
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.4e-43 179.5 112 67.9
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.9e-43 179.1 110 69.1
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.9e-43 179.1 105 73.3
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 1.9e-43 179.1 112 67.9
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 2.5e-43 178.7 105 72.4
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.6e-42 176.0 111 72.1
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 3.6e-42 174.9 128 64.1
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 6.1e-42 174.1 112 67.0
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.3e-41 172.9 112 67.0
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.3e-41 172.2 105 73.3
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.9e-41 171.4 111 65.8
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 5.7e-40 167.5 112 62.5
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.2e-39 165.6 110 63.6
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 1.1e-38 163.3 93 77.4
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.4e-38 162.9 112 63.4
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 9.1e-38 160.2 112 59.8
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.2e-37 159.8 110 61.8
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.9e-36 155.2 112 61.6
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 6.5e-36 154.1 85 77.6
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 1.2e-34 149.8 85 76.5
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 2.1e-34 149.1 112 56.2
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 3.9e-33 144.8 85 72.9
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.1e-33 144.4 110 59.1
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 5.1e-33 144.4 82 79.3
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 5.1e-33 144.4 82 79.3
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 8.8e-33 143.7 112 60.7
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 3.3e-32 141.7 177 44.1
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 1.3e-31 139.8 80 78.8
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 2.2e-31 139.0 110 54.5
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.8e-31 138.7 93 64.5
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 3.7e-31 138.3 81 72.8
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.8e-31 137.9 112 50.0
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.8e-30 136.0 80 73.8
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 2.4e-30 135.6 80 72.5
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 6.9e-30 134.0 80 70.0
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 6.9e-30 134.0 80 73.8
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.2e-29 133.3 79 72.2
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 7.7e-29 130.6 80 71.2
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.7e-28 129.4 77 74.0
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.9e-28 128.6 94 61.7
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.2e-26 123.2 84 63.1
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.2e-26 123.2 80 66.2
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.6e-26 122.9 111 49.5
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 2.7e-26 122.1 81 64.2
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 4.7e-26 121.3 81 65.4
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 2.0e-21 105.9 113 46.0
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.6e-21 105.5 58 81.0
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 3.5e-21 105.1 49 93.9
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 1.7e-20 102.8 113 46.0
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 9.4e-19 97.1 64 67.2
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 2.1e-18 95.9 71 59.2
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 2.7e-18 95.5 97 43.3
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 8.0e-18 94.0 111 40.5
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.0e-16 89.4 56 66.1
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 4.8e-15 84.7 54 70.4
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 4.1e-14 81.6 64 54.7
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.7e-12 76.3 113 33.6
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 1.9e-11 72.8 48 64.6
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.4e-09 66.6 105 35.2
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 3.4e-08 62.0 102 32.4
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 2.2e-07 59.3 112 33.0
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.2e-07 59.3 37 70.3
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 4.8e-07 58.2 113 31.0
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 6.3e-07 57.8 112 30.4
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 8.3e-07 57.4 113 30.1
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.4e-06 55.8 112 29.5
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 5.4e-06 54.7 95 32.6


User provided reference genes

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