Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 0.0e+00 1269.6 632 100.0
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 0.0e+00 1269.6 632 100.0
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 0.0e+00 1269.6 632 100.0
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 0.0e+00 1219.5 632 96.4
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 0.0e+00 1219.1 632 96.4
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 0.0e+00 1111.3 641 87.8
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 6.5e-311 1070.1 660 83.6
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 7.1e-305 1050.0 661 81.4
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 8.9e-292 1006.5 660 79.1
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 7.8e-288 993.4 660 78.2
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.2e-280 969.5 660 76.2
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 3.2e-273 944.9 660 75.3
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 2.1e-261 905.6 670 71.5
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.4e-236 823.2 668 65.6
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.7e-213 745.3 645 64.3
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 6.3e-213 744.6 633 65.2
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 3.7e-205 718.8 676 59.0
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 3.2e-204 715.7 677 57.6
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 1.2e-203 713.8 667 58.3
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.0e-202 710.7 675 59.0
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 2.3e-202 709.5 676 56.8
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 3.0e-202 709.1 670 57.8
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 8.6e-202 707.6 675 57.5
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 1.6e-200 703.4 661 57.3
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 6.2e-200 701.4 675 57.2
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.1e-199 700.7 655 56.2
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.4e-199 700.3 658 56.2
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 6.8e-199 698.0 671 56.2
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.2e-198 697.2 678 56.3
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 1.3e-197 693.7 658 56.2
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 8.3e-197 691.0 669 56.7
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.5e-195 685.6 659 55.8
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 4.6e-195 685.3 657 57.2
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 1.9e-193 679.9 673 55.1
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 3.6e-192 675.6 714 53.8
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 1.1e-191 674.1 665 55.2
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 3.1e-191 672.5 697 53.8
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 6.8e-191 671.4 666 55.3
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 2.0e-190 669.8 681 54.8
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 5.8e-190 668.3 658 56.8
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 7.5e-190 667.9 677 54.2
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 3.7e-189 665.6 686 52.8
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 4.9e-189 665.2 697 53.2
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 6.4e-189 664.8 666 55.4
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 6.4e-189 664.8 665 55.5
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 1.4e-188 663.7 655 55.3
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 3.2e-188 662.5 697 52.5
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 4.6e-187 658.7 662 53.0
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.6e-187 658.7 670 54.2
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 6.0e-187 658.3 670 54.2
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.1e-185 654.1 685 52.1
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.1e-185 654.1 693 54.1
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 5.6e-185 651.7 676 53.3
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.2e-184 650.6 658 55.5
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 2.8e-184 649.4 679 53.9
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 2.2e-181 639.8 657 53.3
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.2e-181 639.8 657 54.3
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.1e-180 637.5 671 53.4
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 1.1e-180 637.5 675 51.7
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.4e-180 637.1 722 50.1
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 1.2e-179 634.0 600 58.5
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 3.9e-178 629.0 641 54.9
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 6.9e-175 618.2 667 52.6
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 2.6e-174 616.3 742 48.5
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 6.4e-173 611.7 623 53.1
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 7.8e-171 604.7 843 43.9
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.7e-170 603.6 655 51.1
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.9e-169 600.1 694 49.9
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.8e-167 593.6 609 54.5
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.2e-165 586.6 651 49.9
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 5.4e-164 582.0 593 55.3
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 3.3e-161 572.8 646 50.6
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.1e-160 570.1 571 55.3
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 1.2e-158 564.3 659 48.7
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.4e-158 562.8 624 55.3
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 3.0e-154 549.7 610 51.0
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 3.7e-152 542.7 666 47.9
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.5e-150 537.3 648 49.1
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 1.1e-148 531.2 651 48.1
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 3.5e-147 526.2 632 47.9
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.0e-146 524.6 634 49.1
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.0e-146 524.6 552 53.8
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 3.9e-146 522.7 642 47.2
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 8.7e-146 521.5 633 47.1
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 1.6e-144 517.3 632 47.3
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 4.8e-144 515.8 623 48.2
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 8.2e-144 515.0 585 51.1
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 2.1e-139 500.4 674 45.5
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 4.3e-137 492.7 527 52.8
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 9.1e-135 485.0 542 53.0
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 7.9e-131 471.9 489 52.4
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 4.2e-124 449.5 666 40.8
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 2.7e-123 446.8 497 50.5
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.4e-119 433.7 514 47.5
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 7.0e-119 432.2 561 47.4
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 3.2e-116 423.3 642 40.0
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.0e-114 418.3 647 39.7
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 4.2e-108 396.4 641 38.1
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.2e-107 394.8 531 43.5
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 5.4e-103 379.4 450 49.3
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.0e-97 360.9 750 35.1
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 4.9e-88 329.7 488 43.6
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 7.3e-84 315.8 225 69.8
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.2e-83 315.1 449 42.1
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.5e-81 305.8 298 57.0
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 2.3e-77 294.3 552 35.9
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 5.1e-77 293.1 912 28.7
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 2.8e-75 287.3 635 33.1
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.5e-68 264.2 214 62.1
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.1e-63 248.8 214 57.5
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 6.2e-59 233.0 171 69.6
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 6.4e-56 223.0 165 69.1
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 8.4e-56 222.6 432 36.1
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.2e-55 220.7 183 62.3
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.0e-53 215.7 177 65.0
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 4.3e-52 210.3 168 61.9
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 4.5e-49 200.3 300 44.0
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.7e-48 198.4 136 73.5
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.3e-45 188.7 146 64.4
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 1.3e-45 188.7 167 61.7
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.8e-42 178.3 175 52.0
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.7e-40 171.8 149 57.0
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 7.1e-39 166.4 330 34.8
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.0e-37 162.5 119 67.2
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.8e-37 161.8 144 58.3
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.0e-37 161.0 175 49.7
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 3.3e-36 157.5 655 26.6
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.8e-34 151.8 101 71.3
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 3.8e-32 144.1 341 32.3
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.0e-29 134.4 146 49.3
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 2.2e-27 128.3 123 47.2
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 2.0e-25 121.7 168 45.8
Sp5g22380 Schrenkiella parvula HOM05D004944 ORTHO05D005989 6.1e-22 110.2 91 59.3
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 7.9e-22 109.8 90 55.6
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 1.0e-21 109.4 145 45.5
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.8e-21 108.6 90 64.4
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.5e-20 105.5 243 33.3
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 2.0e-20 105.1 339 29.8
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 2.4e-18 98.2 151 42.4
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 6.9e-18 96.7 54 83.3
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 9.1e-18 96.3 52 84.6
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 2.6e-17 94.7 173 33.5
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 2.5e-15 88.2 54 72.2
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 2.8e-11 74.7 64 50.0
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 6.3e-11 73.6 62 53.2
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 4.1e-10 70.9 151 33.1


User provided reference genes

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