Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p08310 Brassica napus HOM05D003635 ORTHO05D021615 5.5e-133 477.6 242 100.0
BolC9t53741H Brassica oleracea HOM05D003635 ORTHO05D021615 5.5e-133 477.6 242 100.0
BraA09t36394Z Brassica rapa HOM05D003635 ORTHO05D021615 3.4e-82 308.9 190 86.8
BcaC04g23440 Brassica carinata HOM05D003635 ORTHO05D021615 5.7e-61 238.4 123 97.6
BcaC04g23439 Brassica carinata HOM05D011657 ORTHO05D021615 4.5e-42 175.6 86 98.8
Eucgr.J01165 Eucalyptus grandis HOM05D003635 ORTHO05D004283 1.5e-13 80.9 52 82.7
MD01G1119800 Malus domestica HOM05D003635 ORTHO05D004283 1.5e-13 80.9 57 73.7
unitig_736.g22269 Utricularia gibba HOM05D003635 ORTHO05D004283 2.0e-13 80.5 75 57.3
Aa31LG10G9870 Aethionema arabicum HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
BcaB02g07694 Brassica carinata HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
BcaC09g48162 Brassica carinata HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
BolC1t05325H Brassica oleracea HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
BraA01t04192Z Brassica rapa HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
Carub.0005s2188 Capsella rubella HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
CARHR289060 Cardamine hirsuta HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
Thhalv10006588m.g Eutrema salsugineum HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
Mapoly0009s0019 Marchantia polymorpha HOM05D003635 ORTHO05D004283 2.6e-13 80.1 50 80.0
Sp5g07240 Schrenkiella parvula HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
THA.LOC104810010 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
THA.LOC104824257 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 2.6e-13 80.1 47 89.4
MSTRG.22089 Avicennia marina HOM05D003635 ORTHO05D004283 3.4e-13 79.7 50 80.0
Cc00_g29200 Coffea canephora HOM05D003635 ORTHO05D004283 3.4e-13 79.7 50 80.0
DCAR_019162 Daucus carota HOM05D003635 ORTHO05D004283 3.4e-13 79.7 50 80.0
Dinv25952 Davidia involucrata HOM05D003635 ORTHO05D004283 3.4e-13 79.7 50 80.0
Dinv31402 Davidia involucrata HOM05D003635 ORTHO05D004283 3.4e-13 79.7 50 80.0
Migut.N02978 Erythranthe guttata HOM05D003635 ORTHO05D004283 3.4e-13 79.7 50 80.0
FAN03G1481 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.4e-13 79.7 55 76.4
FAN06G4735 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.4e-13 79.7 55 76.4
FAN10G2700 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.4e-13 79.7 55 76.4
Hma1.2p1_3477F.1_g336300 Hydrangea macrophylla HOM05D003635 ORTHO05D004283 3.4e-13 79.7 50 80.0
Lsat_1_v5_gn_8_18261 Lactuca sativa HOM05D003635 ORTHO05D004283 3.4e-13 79.7 75 57.3
Lj8A91T61 Lonicera japonica HOM05D003635 ORTHO05D004283 3.4e-13 79.7 50 80.0
ATR0820G062 Amborella trichopoda HOM05D003635 ORTHO05D004283 4.4e-13 79.3 75 53.3
Aqoxy1G01641 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
Aqoxy2G04103 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
CSS0019699 Camellia sinensis var. sinensis HOM05D003635 ORTHO05D004283 4.4e-13 79.3 75 58.7
CAN.G1557.8 Capsicum annuum HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
ECA233G0861 Erigeron canadensis HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
FvH4_1g28630 Fragaria vesca HOM05D003635 ORTHO05D004283 4.4e-13 79.3 55 72.7
Nitab4.5_0000426g0110 Nicotiana tabacum HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
Nitab4.5_0012497g0010 Nicotiana tabacum HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
Peaxi162Scf00060g00511 Petunia axillaris HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
SEGI_11055 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 4.4e-13 79.3 47 85.1
Solyc04g010260.3 Solanum lycopersicum HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
Sopen04g005450 Solanum pennellii HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
PGSC0003DMG400030187 Solanum tuberosum HOM05D003635 ORTHO05D004283 4.4e-13 79.3 50 78.0
Cpa.g.sc1.324 Carica papaya HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
ClCG02G013500 Citrullus lanatus HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
MELO3C023823.2 Cucumis melo HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
CsaV3_5G006650 Cucumis sativus L. HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
DCAR_015231 Daucus carota HOM05D003635 ORTHO05D004283 5.7e-13 79.0 50 76.0
Duzib114G0516 Durio zibethinus HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
Duzib128G1000 Durio zibethinus HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
FvH4_7g20980 Fragaria vesca HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
Gohir.A05G351700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
Gohir.D04G061100 Gossypium hirsutum HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
Gorai.012G068000 Gossypium raimondii HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
MD07G1189000 Malus domestica HOM05D003635 ORTHO05D004283 5.7e-13 79.0 57 71.9
Manes.07G109100 Manihot esculenta HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
Manes.10G036500 Manihot esculenta HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
Medtr1g115525 Medicago truncatula HOM05D003635 ORTHO05D004283 5.7e-13 79.0 57 71.9
Medtr6g013290 Medicago truncatula HOM05D003635 ORTHO05D004283 5.7e-13 79.0 57 71.9
Nn2g10520 Nelumbo nucifera HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
Nn2g12856 Nelumbo nucifera HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
PSO339G2718 Papaver somniferum HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
PSO384G4083 Papaver somniferum HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
Prupe.2G226500 Prunus persica HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
RcHm_v2.0_Chr3g0492631 Rosa chinensis HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
SalBow7G2745 Salvia bowleyana HOM05D003635 ORTHO05D004283 5.7e-13 79.0 75 54.7
Sed0026990 Sechium edule HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
Thecc.10G059000 Theobroma cacao HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
TAR369G0684 Trochodendron aralioides HOM05D003635 ORTHO05D004283 5.7e-13 79.0 47 85.1
AT3G55200 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 87.2
AT3G55220 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 87.2
CiPaw.01G281100 Carya illinoinensis HOM05D003635 ORTHO05D004283 7.5e-13 78.6 72 61.1
CBR_g32401 Chara braunii HOM05D003635 ORTHO05D004283 7.5e-13 78.6 50 78.0
COL.COLO4_10911 Corchorus olitorius HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
FAN06G2419 Fragaria x ananassa HOM05D003635 ORTHO05D004283 7.5e-13 78.6 55 74.5
FAN19G1456 Fragaria x ananassa HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
FAN23G1337 Fragaria x ananassa HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
FAN23G3063 Fragaria x ananassa HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
FAN26G2866 Fragaria x ananassa HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
FAN28G1205 Fragaria x ananassa HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
Gohir.A10G210700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
Gohir.D10G219000 Gossypium hirsutum HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
Gorai.011G245700 Gossypium raimondii HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
Potri.008G048900 Populus trichocarpa HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
Potri.010G212100 Populus trichocarpa HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
PGR142G3382 Punica granatum HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
Sabra08G0035000 Salix brachista HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
Sc06g0001910 Simmondsia chinensis HOM05D003635 ORTHO05D004283 7.5e-13 78.6 47 83.0
Atru.chr12.571 Acer truncatum HOM05D003635 ORTHO05D004283 9.8e-13 78.2 47 83.0
EL10Ac2g03470 Beta vulgaris HOM05D003635 ORTHO05D004283 9.8e-13 78.2 49 77.6
Oeu016870.1 Olea europaea HOM05D003635 ORTHO05D004283 9.8e-13 78.2 50 78.0
Pp3c12_11240 Physcomitrium patens HOM05D003635 ORTHO05D004283 9.8e-13 78.2 47 83.0
Pp3c4_5190 Physcomitrium patens HOM05D003635 ORTHO05D004283 9.8e-13 78.2 47 83.0
CANSAT56G1536 Cannabis sativa HOM05D003635 ORTHO05D004283 1.3e-12 77.8 52 76.9
Cfa001548 Carpinus fangiana HOM05D003635 ORTHO05D004283 1.3e-12 77.8 47 83.0
CiPaw.02G179700 Carya illinoinensis HOM05D003635 ORTHO05D004283 1.3e-12 77.8 47 83.0
CDE02G2560 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 1.3e-12 77.8 47 83.0
CDE09G0269 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 1.3e-12 77.8 47 83.0
Haze_16985 Corylus avellana HOM05D003635 ORTHO05D004283 1.3e-12 77.8 47 83.0
HanXRQChr08g0228691 Helianthus annuus HOM05D003635 ORTHO05D004283 1.3e-12 77.8 75 54.7
HanXRQChr14g0437201 Helianthus annuus HOM05D003635 ORTHO05D004283 1.3e-12 77.8 75 54.7
SGA_v2.0_scaffold364G49990 Striga asiatica HOM05D003635 ORTHO05D004283 1.3e-12 77.8 50 76.0
SGA_v2.0_scaffold54G19634 Striga asiatica HOM05D003635 ORTHO05D004283 1.3e-12 77.8 50 76.0
TPR.G14006 Trifolium pratense HOM05D003635 ORTHO05D004283 1.3e-12 77.8 50 78.0
Ah.09g234270 Amaranthus hybridus HOM05D003635 ORTHO05D004283 1.7e-12 77.4 49 77.6
AagrBONN_evm.TU.Sc2ySwM_368.1182 Anthoceros agrestis HOM05D003635 ORTHO05D004283 1.7e-12 77.4 47 80.9
AUR62022537 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.7e-12 77.4 49 77.6
AUR62035965 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.7e-12 77.4 49 77.6
Hund19994 Selenicereus undatus HOM05D003635 ORTHO05D004283 1.7e-12 77.4 49 77.6
arahy.Tifrunner.gnm1.ann1.4JT818 Arachis hypogaea HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
arahy.Tifrunner.gnm1.ann1.T81D7J Arachis hypogaea HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
Glyma.10G291300 Glycine max HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
Glyma.20G240500 Glycine max HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
Lj5g0001158 Lotus japonicus HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
Lalb_Chr02g0143971 Lupinus albus HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
Lalb_Chr06g0164191 Lupinus albus HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
Phvul.007G009600 Phaseolus vulgaris HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
Psat6g237600 Pisum sativum HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
VMungo0720G0614 Vigna mungo HOM05D003635 ORTHO05D004283 2.2e-12 77.0 47 83.0
Actinidia29205 Actinidia chinensis HOM05D003635 ORTHO05D004283 2.8e-12 76.6 50 78.0
Rhsim09G0157900 Rhododendron simsii HOM05D003635 ORTHO05D004283 2.8e-12 76.6 50 78.0
RcHm_v2.0_Chr1g0365341 Rosa chinensis HOM05D003635 ORTHO05D004283 2.8e-12 76.6 55 74.5
Ca_11305_v3 Cicer arietinum L. HOM05D003635 ORTHO05D004283 4.9e-12 75.9 47 80.9
HPP92_027161 Vanilla planifolia HOM05D003635 ORTHO05D004283 4.9e-12 75.9 46 80.4
Ciclev10030532m.g Citrus clementina HOM05D003635 ORTHO05D004283 6.3e-12 75.5 72 58.3
Pp3c16_16800 Physcomitrium patens HOM05D003635 ORTHO05D004283 6.3e-12 75.5 47 80.9
TWI63G0503 Tripterygium wilfordii HOM05D003635 ORTHO05D004283 8.3e-12 75.1 47 83.0
Zm00001eb231820 Zea mays HOM05D003635 ORTHO05D004283 1.1e-11 74.7 72 58.3
AL5G36324 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 1.8e-11 73.9 40 90.0
AL5G36340 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 1.8e-11 73.9 40 90.0
Carub.0005s2186 Capsella rubella HOM05D003635 ORTHO05D004283 1.8e-11 73.9 40 90.0
HanXRQChr08g0234761 Helianthus annuus HOM05D003635 ORTHO05D004283 2.4e-11 73.6 75 52.0
Medtr4g115810 Medicago truncatula HOM05D003635 ORTHO05D004283 2.4e-11 73.6 50 74.0
CARHR289050 Cardamine hirsuta HOM05D003635 ORTHO05D021615 3.1e-11 73.2 40 87.5
Medtr4g115500 Medicago truncatula HOM05D003635 ORTHO05D004283 4.1e-11 72.8 47 78.7
QL08p057820 Quercus lobata HOM05D003635 ORTHO05D004283 4.1e-11 72.8 47 76.6
Os02g0137400 Oryza sativa ssp. japonica HOM05D003635 ORTHO05D004283 7.0e-11 72.0 72 55.6
Sabra10G0164300 Salix brachista HOM05D003635 ORTHO05D004283 1.6e-10 70.9 52 71.2
Cc00_g13950 Coffea canephora HOM05D003635 ORTHO05D004283 2.0e-10 70.5 40 82.5
SMO116G0157 Selaginella moellendorffii HOM05D003635 ORTHO05D004283 2.0e-10 70.5 47 76.6
GSVIVG01005970001 Vitis vinifera HOM05D003635 ORTHO05D004283 2.0e-10 70.5 40 85.0
TPR.G13999 Trifolium pratense HOM05D003635 ORTHO05D004283 2.7e-10 70.1 40 85.0
AUR62044277 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.5e-10 69.7 40 82.5
MD07G1188800 Malus domestica HOM05D003635 ORTHO05D004283 3.5e-10 69.7 40 85.0
HPP92_016710 Vanilla planifolia HOM05D003635 ORTHO05D004283 3.5e-10 69.7 40 87.5
FAN01G1516 Fragaria x ananassa HOM05D003635 ORTHO05D004283 4.5e-10 69.3 40 80.0
FAN10G0554 Fragaria x ananassa HOM05D003635 ORTHO05D002227 4.5e-10 69.3 40 80.0
AUR62023868 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.0e-09 68.2 49 67.3
AUR62002616 Chenopodium quinoa HOM05D003635 ORTHO05D004283 2.3e-09 67.0 49 67.3
Actinidia02986 Actinidia chinensis HOM05D003635 ORTHO05D004283 2.9e-09 66.6 40 77.5
Actinidia26801 Actinidia chinensis HOM05D003635 ORTHO05D004283 2.9e-09 66.6 98 43.9
FAN28G1684 Fragaria x ananassa HOM05D003635 ORTHO05D004283 5.0e-09 65.9 98 43.9
Actinidia13851 Actinidia chinensis HOM05D003635 ORTHO05D004283 8.6e-09 65.1 98 43.9
AUR62002316 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.1e-08 64.7 49 65.3
RcHm_v2.0_Chr1g0365361 Rosa chinensis HOM05D003635 ORTHO05D004283 1.5e-08 64.3 95 43.2
AagrBONN_evm.TU.Sc2ySwM_362.982 Anthoceros agrestis HOM05D003635 ORTHO05D004283 1.9e-08 63.9 40 77.5
MCO14G333 Micromonas commoda HOM05D003635 ORTHO05D004283 1.9e-08 63.9 72 50.0
TPR.G35191 Trifolium pratense HOM05D003635 ORTHO05D004283 1.9e-08 63.9 95 43.2
AUR62039159 Chenopodium quinoa HOM05D000030 ORTHO05D000009 6.1e-07 58.9 40 67.5
FAN01G1416 Fragaria x ananassa HOM05D000005 ORTHO05D004283 1.4e-06 57.8 95 40.0
Rhsim09G0158100 Rhododendron simsii HOM05D003635 ORTHO05D004283 3.0e-06 56.6 32 81.2
Cre08.g372800 Chlamydomonas reinhardtii HOM05D003635 ORTHO05D004283 8.9e-06 55.1 151 33.1
Psat5g199040 Pisum sativum HOM05D003635 ORTHO05D004283 8.9e-06 55.1 30 83.3


User provided reference genes

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