Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1624.8 902 100.0
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1561.6 866 97.9
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1561.6 866 97.9
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1533.9 895 92.8
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1520.8 896 93.2
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1427.2 872 90.8
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 0.0e+00 1424.8 877 85.3
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1399.8 902 83.0
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1392.5 913 81.6
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1390.2 913 81.5
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 0.0e+00 1387.9 853 87.5
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1369.4 902 81.9
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 0.0e+00 1310.4 832 81.9
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 0.0e+00 1307.7 825 82.5
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 0.0e+00 1281.9 832 81.0
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 0.0e+00 1236.9 857 76.8
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 7.3e-306 1053.9 842 69.7
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 1.7e-270 936.4 798 62.5
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 4.2e-269 931.8 833 60.5
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 3.6e-268 928.7 859 59.0
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 8.8e-267 924.1 866 59.6
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 1.1e-266 923.7 831 59.6
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 2.5e-266 922.5 801 62.0
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 9.1e-264 914.1 801 60.8
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 2.6e-263 912.5 808 61.3
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 5.9e-263 911.4 804 60.4
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 5.9e-263 911.4 801 60.9
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 7.7e-263 911.0 808 61.1
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 7.7e-263 911.0 815 60.2
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 1.9e-261 906.4 838 59.4
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.6e-260 903.3 807 60.6
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 3.9e-259 898.7 815 59.9
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 2.0e-258 896.3 806 60.3
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 2.0e-258 896.3 814 60.3
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 5.7e-258 894.8 825 59.3
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 1.8e-256 889.8 870 58.0
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 4.1e-256 888.6 813 59.8
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 5.0e-254 881.7 805 59.9
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 5.5e-253 878.2 805 59.3
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 7.2e-253 877.9 845 57.2
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 7.2e-253 877.9 913 54.8
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 9.4e-253 877.5 866 56.1
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 1.2e-252 877.1 840 57.5
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.7e-252 875.9 867 57.2
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 6.1e-252 874.8 860 56.9
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 1.4e-251 873.6 856 57.1
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 3.0e-251 872.5 804 58.1
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 3.0e-251 872.5 819 58.6
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 3.9e-251 872.1 804 59.6
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.2e-251 871.7 842 58.1
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 1.1e-250 870.5 859 56.5
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 1.5e-250 870.2 843 57.2
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.5e-250 870.2 843 56.7
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 2.6e-250 869.4 844 56.8
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 3.3e-250 869.0 840 57.7
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 4.4e-250 868.6 804 59.7
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 7.4e-250 867.8 806 59.3
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 1.7e-249 866.7 799 59.9
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 1.7e-249 866.7 814 57.6
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 3.7e-249 865.5 814 57.5
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 8.2e-249 864.4 803 58.3
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.1e-248 864.0 839 57.1
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 1.1e-248 864.0 878 55.6
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 9.1e-248 860.9 866 55.8
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 5.9e-247 858.2 846 57.1
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 1.7e-246 856.7 927 54.0
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 2.9e-246 855.9 743 61.8
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 1.9e-245 853.2 839 56.6
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 2.3e-243 846.3 813 57.8
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 2.0e-242 843.2 802 57.7
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 7.5e-242 841.3 842 56.3
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 6.3e-241 838.2 820 57.0
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 6.3e-241 838.2 807 57.0
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 3.1e-240 835.9 823 57.5
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 3.1e-240 835.9 819 57.8
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 1.0e-238 830.9 826 54.7
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 5.0e-238 828.6 868 53.9
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 5.5e-237 825.1 831 55.7
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 9.4e-237 824.3 861 54.7
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 4.7e-236 822.0 742 59.7
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.0e-235 820.8 923 51.5
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 1.4e-235 820.5 854 56.8
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 7.0e-232 808.1 740 58.5
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.7e-231 806.2 828 54.6
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 5.9e-231 805.1 889 51.9
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 5.6e-229 798.5 797 56.6
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 6.8e-227 791.6 560 76.8
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.7e-223 779.6 736 58.2
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 2.3e-219 766.5 989 47.7
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 3.7e-217 759.2 829 52.2
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 3.2e-216 756.1 805 51.9
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 8.6e-214 748.0 797 53.6
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 4.7e-212 742.3 802 53.0
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 1.5e-205 720.7 705 56.3
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 3.1e-203 713.0 799 51.8
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 5.8e-202 708.8 887 48.7
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 4.3e-197 692.6 895 49.5
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 2.8e-196 689.9 878 47.6
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 1.3e-180 637.9 791 47.9
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 3.5e-159 566.6 840 43.6
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 9.0e-155 552.0 897 41.4
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 7.4e-149 532.3 506 56.1
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 4.0e-134 483.4 847 39.8
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 6.5e-129 466.1 846 38.9
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 2.1e-127 461.1 669 45.4
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 7.0e-123 446.0 441 54.4
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.3e-102 377.9 351 55.0
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 4.4e-93 347.1 322 64.6
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 9.5e-88 329.3 1002 30.5
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.2e-79 302.4 224 70.1
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.0e-73 282.7 448 41.5
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.4e-59 235.7 737 31.2
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 4.1e-46 191.0 345 36.8
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 9.3e-43 179.9 192 52.6
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 5.1e-41 174.1 107 78.5
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 5.3e-38 164.1 106 74.5
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 4.6e-34 151.0 232 40.5
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 2.7e-26 125.2 87 75.9
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.4e-22 112.8 146 41.1
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 5.9e-21 107.5 682 24.0
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 4.2e-19 101.3 73 68.5
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.1e-10 72.4 46 73.9
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.8e-07 62.0 75 37.3
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 8.3e-07 60.5 73 37.0
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.1e-06 60.1 75 36.0
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.1e-06 60.1 67 38.8
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 1.1e-06 60.1 62 45.2
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 2.4e-06 58.9 103 32.0
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.1e-06 58.5 75 36.0
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 7.0e-06 57.4 90 35.6
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 7.0e-06 57.4 73 37.0
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 7.0e-06 57.4 77 35.1
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 9.1e-06 57.0 89 34.8


User provided reference genes

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