Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 0.0e+00 1305.0 658 100.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 0.0e+00 1241.5 658 95.9
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 0.0e+00 1206.4 658 94.2
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 0.0e+00 1205.3 662 93.7
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 0.0e+00 1205.3 661 93.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.3e-263 911.0 701 72.2
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.9e-224 782.3 686 63.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.7e-206 722.6 718 58.5
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 3.3e-204 715.7 721 57.0
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.1e-199 698.0 713 56.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.1e-194 682.6 688 56.4
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.4e-180 634.8 642 58.6
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 2.1e-166 590.1 718 47.6
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 6.1e-158 562.0 670 50.3
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.3e-149 533.5 464 62.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 4.4e-140 502.7 747 41.2
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.1e-134 483.8 750 41.6
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 6.1e-134 482.3 704 42.8
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.8e-131 472.6 731 41.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 8.3e-131 471.9 732 41.1
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 4.1e-130 469.5 733 40.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.3e-128 464.5 720 41.7
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.8e-128 463.0 728 40.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 3.8e-128 463.0 728 40.9
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.5e-127 461.1 728 42.2
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 4.2e-127 459.5 733 41.6
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 7.2e-127 458.8 721 42.3
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.2e-126 458.0 686 42.4
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 2.1e-126 457.2 727 41.8
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.8e-125 454.1 664 42.3
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.3e-125 453.8 716 40.6
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 6.3e-123 445.7 746 39.4
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 6.3e-123 445.7 666 42.0
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.4e-122 443.7 365 66.0
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 9.2e-122 441.8 720 41.4
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 9.2e-122 441.8 670 44.0
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 2.0e-121 440.7 705 40.3
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.5e-121 439.9 736 40.8
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 3.5e-121 439.9 736 40.8
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 5.9e-121 439.1 738 39.6
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 7.7e-121 438.7 751 38.6
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 7.7e-121 438.7 725 39.9
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.0e-120 436.0 677 40.8
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 6.6e-120 435.6 653 41.0
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 1.1e-119 434.9 667 41.1
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.5e-119 434.5 666 43.7
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 4.3e-119 433.0 718 40.0
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 7.3e-119 432.2 710 42.1
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 9.5e-119 431.8 734 38.3
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.2e-118 431.4 718 38.2
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.6e-118 431.0 743 38.1
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.6e-118 431.0 710 40.1
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 2.8e-118 430.3 670 43.3
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.7e-118 429.5 723 40.1
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 6.1e-118 429.1 669 42.9
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 8.0e-118 428.7 743 37.7
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 8.0e-118 428.7 659 41.0
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.0e-117 428.3 718 40.8
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.3e-117 427.2 668 40.7
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 5.2e-117 426.0 679 40.8
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.5e-116 424.5 749 38.5
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.5e-116 424.5 721 38.8
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 3.4e-116 423.3 670 40.3
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 3.4e-116 423.3 661 40.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.4e-116 422.9 709 41.0
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.1e-114 418.3 706 39.7
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.4e-114 417.2 684 39.9
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.5e-113 413.3 701 39.9
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 3.5e-113 413.3 871 34.4
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.5e-113 413.3 733 37.8
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.0e-112 411.8 599 41.4
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.7e-112 411.0 677 38.8
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 2.3e-112 410.6 645 40.6
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 3.0e-112 410.2 722 38.9
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.0e-112 409.5 741 37.4
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 5.0e-112 409.5 673 39.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 6.6e-112 409.1 744 38.0
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 8.6e-112 408.7 722 38.8
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 8.6e-112 408.7 675 40.3
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.5e-111 407.1 722 38.8
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 2.5e-111 407.1 663 40.1
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 5.6e-111 406.0 736 39.1
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.5e-111 405.2 695 38.8
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.0e-109 401.7 727 37.0
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.1e-109 400.2 724 39.0
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 6.8e-109 399.1 709 38.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.8e-108 395.2 735 37.4
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 7.0e-106 389.0 676 40.2
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 7.0e-106 389.0 656 38.1
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.5e-105 386.7 659 38.1
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 7.8e-105 385.6 721 36.3
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.3e-104 384.8 750 36.4
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.3e-104 384.8 671 38.0
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.9e-104 383.3 630 38.6
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.9e-103 380.9 672 39.6
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 9.5e-103 378.6 667 38.5
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 4.7e-102 376.3 738 36.4
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.6e-100 370.5 693 38.7
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.6e-100 370.5 668 37.3
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.4e-100 370.2 688 38.7
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 5.8e-100 369.4 698 36.7
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.3e-99 368.2 702 35.5
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.5e-92 344.7 573 38.9
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.4e-92 343.6 659 36.6
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.3e-91 341.7 515 40.4
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 8.4e-91 339.0 650 34.6
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 4.6e-89 333.2 419 46.5
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 2.3e-88 330.9 481 42.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 2.2e-83 314.3 426 44.8
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.0e-80 305.4 643 33.6
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.3e-80 304.3 446 41.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 8.1e-78 295.8 561 38.0
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.3e-75 288.5 539 37.8
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 9.6e-71 272.3 697 29.8
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 2.8e-70 270.8 513 37.0
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 4.5e-68 263.5 405 41.7
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 8.4e-67 259.2 706 29.6
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.1e-66 258.8 374 42.5
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.4e-60 237.3 343 43.7
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 4.9e-59 233.4 141 85.8
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.5e-58 231.1 659 31.4
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.1e-57 228.0 660 30.5
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.1e-53 215.7 378 39.4
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.0e-52 211.5 364 38.2
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 4.5e-52 210.3 294 41.5
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.2e-50 204.1 268 47.8
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.9e-47 194.9 205 54.6
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.2e-46 191.4 352 37.2
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.3e-46 189.9 621 26.7
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 8.5e-43 179.5 806 24.3
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 3.9e-40 170.6 164 54.3
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 8.2e-38 162.9 215 48.4
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.3e-35 155.6 463 28.7
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 3.6e-33 147.5 464 28.7
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.7e-31 140.2 214 44.9
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.7e-30 138.7 148 51.4
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 6.3e-30 136.7 93 65.6
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.1e-29 136.0 276 31.9
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 2.0e-28 131.7 93 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.6e-28 131.3 742 23.0
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.5e-26 124.8 261 35.2
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 4.7e-25 120.6 203 38.9
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.0e-24 117.9 156 45.5
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.2e-24 117.1 230 34.8
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.7e-22 112.1 252 37.7
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.7e-22 112.1 141 43.3
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 3.5e-20 104.4 151 39.7
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.2e-16 90.5 214 29.4
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 8.3e-14 83.2 75 56.0
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-13 82.8 65 66.2
BcaC02g09546 Brassica carinata HOM05D037504 ORTHO05D032183 2.4e-13 81.6 179 36.9
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.3e-11 75.9 375 24.3
AT4G01340 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 1.9e-10 72.0 56 66.1
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.6e-09 67.8 297 24.6
AL5G12560 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 3.0e-08 64.7 49 55.1
Carub.0005s0182 Capsella rubella HOM05D000082 ORTHO05D000038 6.8e-08 63.5 42 66.7
C04p43980 Brassica napus HOM05D037504 ORTHO05D032183 1.5e-07 62.4 98 45.9
BolC4t25980H Brassica oleracea HOM05D037504 ORTHO05D032183 1.5e-07 62.4 98 45.9
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 2.6e-07 61.6 180 30.6
AT4G01335 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 3.4e-07 61.2 52 63.5
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.3e-06 59.3 75 44.0
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 4.9e-06 57.4 63 41.3
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 6.3e-06 57.0 63 46.0


User provided reference genes

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