Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2837.4 1460 100.0
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2782.3 1461 98.2
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2772.3 1462 98.2
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2771.1 1461 97.8
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2770.3 1463 97.8
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2676.0 1470 95.0
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2662.1 1465 93.2
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2660.6 1465 93.2
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2660.2 1468 93.1
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2651.3 1465 93.0
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2649.8 1465 93.2
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2642.5 1465 93.1
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2635.1 1468 92.8
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2585.4 1472 90.6
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2583.1 1473 91.0
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2563.9 1476 90.0
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2548.1 1470 89.3
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2379.4 1335 92.6
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2343.2 1440 84.8
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2325.4 1481 81.4
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2195.2 1502 75.9
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2171.4 1502 75.0
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2171.0 1498 74.9
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2168.3 1502 74.9
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2163.7 1504 75.3
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2159.8 1501 75.1
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2154.4 1502 74.8
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2145.5 1504 74.4
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1500 73.3
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2128.6 1502 73.8
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2118.6 1501 73.1
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2117.8 1507 73.5
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2105.5 1499 73.2
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2102.4 1503 72.6
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2095.9 1490 72.8
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2094.7 1495 72.7
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2091.2 1505 72.0
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2089.3 1495 72.4
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2086.6 1495 72.4
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2085.5 1496 71.9
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2084.7 1497 72.1
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2083.1 1503 71.8
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2080.1 1496 72.1
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2075.8 1491 72.2
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2075.8 1485 73.1
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2072.0 1498 72.0
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2070.8 1497 71.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2070.4 1500 71.6
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2066.2 1495 71.6
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2065.0 1503 71.3
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2055.4 1496 71.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2051.2 1504 71.1
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2049.6 1521 70.2
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2044.6 1485 70.9
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2042.7 1495 70.9
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2035.0 1494 70.3
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2032.3 1497 70.2
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2030.0 1497 70.1
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2027.7 1497 70.1
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2023.4 1497 70.0
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2022.3 1496 70.5
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2018.0 1490 70.2
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2016.9 1496 69.9
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2015.4 1452 72.4
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2012.7 1492 70.0
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2012.3 1501 69.5
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2010.3 1503 69.8
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2007.3 1554 68.1
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2003.0 1500 69.7
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2002.3 1490 70.0
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1999.2 1497 70.3
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1998.0 1491 69.1
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 1996.9 1500 69.5
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1996.1 1498 69.0
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1995.3 1492 69.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1991.9 1497 69.1
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 1991.9 1497 68.7
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 1989.2 1537 67.9
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1975.7 1568 66.8
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1962.2 1501 68.4
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1961.0 1551 66.5
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1948.7 1497 68.4
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1947.6 1493 67.6
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1938.3 1477 67.4
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1926.4 1487 66.8
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1924.8 1493 67.8
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1919.4 1493 67.7
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1904.4 1474 67.2
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1904.4 1499 66.4
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1903.3 1501 66.9
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1867.4 1473 66.4
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1856.6 1568 63.5
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1848.6 1510 65.0
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1833.5 1313 73.8
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1808.9 1311 72.6
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1800.0 1315 72.2
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1783.8 1276 72.5
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1783.1 1584 62.3
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1779.6 1479 63.5
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1704.5 1490 59.9
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1701.4 1208 73.1
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1697.6 1310 68.5
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1669.1 1388 65.9
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1638.2 1413 61.8
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1612.4 1441 58.4
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1610.5 1447 60.8
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1515.4 1534 54.6
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1507.3 988 77.2
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1503.4 1527 53.9
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1369.4 1396 55.8
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1298.9 1207 56.8
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1297.0 1094 64.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1247.3 1294 53.5
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1218.0 1368 51.9
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1170.6 1368 50.5
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 2.4e-300 1036.2 1257 50.3
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.5e-289 999.6 746 73.1
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 1.8e-287 993.4 746 68.9
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.5e-284 981.9 849 60.5
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 5.3e-247 859.0 771 60.8
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 7.0e-239 832.0 882 55.1
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.2e-228 796.6 578 68.7
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 5.9e-222 775.8 906 51.9
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 7.3e-220 768.8 717 58.2
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.1e-199 699.9 470 78.7
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 6.0e-198 696.0 608 59.4
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 7.1e-183 646.0 608 58.9
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.5e-166 590.5 361 78.1
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.1e-162 578.9 736 46.1
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.1e-150 538.1 449 68.2
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 4.5e-145 520.4 469 64.0
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 3.3e-132 477.6 540 53.3
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 9.8e-116 422.9 743 39.8
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 9.5e-103 379.8 1756 25.1
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.3e-96 359.4 230 80.0
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 6.8e-93 347.1 1335 28.2
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.9e-88 331.3 444 45.3
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 2.0e-84 318.9 1625 24.9
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.0e-80 305.1 225 70.7
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 7.1e-74 283.9 398 46.7
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.5e-71 275.4 236 60.2
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.4e-69 269.6 239 63.2
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 3.1e-69 268.5 155 78.7
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 4.4e-68 264.6 152 78.9
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.3e-63 248.4 263 54.0
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.3e-59 236.5 206 57.8
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 3.7e-46 191.8 102 87.3
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 3.4e-44 185.3 155 63.2
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.3e-40 173.3 336 39.0
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 3.0e-40 172.2 1201 22.7
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 8.7e-40 170.6 186 51.6
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 7.7e-36 157.5 190 50.0
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.2e-33 150.2 226 47.3
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 2.7e-33 149.1 130 60.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 3.6e-33 148.7 107 72.0
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 8.8e-32 144.1 102 72.5
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.9e-26 126.3 131 51.1
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.7e-25 122.5 101 66.3
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 9.7e-23 114.0 55 90.9
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.0e-20 106.3 64 76.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 2.6e-20 105.9 67 73.1
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.4e-18 100.1 131 48.1
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 8.8e-16 90.9 110 52.7
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.2e-14 86.3 53 75.5
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.2e-14 86.3 53 75.5
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 6.3e-14 84.7 69 60.9
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 2.1e-09 69.7 35 85.7
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 1.4e-08 67.0 50 62.0
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 3.7e-06 58.9 136 30.1


User provided reference genes

Program Settings