Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p20750 Brassica napus HOM05D022549 ORTHO05D021911 2.6e-36 154.8 76 100.0
BolC8t49710H Brassica oleracea HOM05D022549 ORTHO05D021911 2.6e-36 154.8 76 100.0
BolC8t49712H Brassica oleracea HOM05D000515 ORTHO05D021911 7.0e-34 146.7 76 94.7
BcaB05g21737 Brassica carinata HOM05D000515 ORTHO05D021911 1.5e-23 112.5 83 69.9
BcaB01g04697 Brassica carinata HOM05D000515 ORTHO05D003188 5.8e-20 100.5 63 81.0
BcaC01g06571 Brassica carinata HOM05D000515 ORTHO05D003188 5.8e-20 100.5 63 79.4
A03p10870 Brassica napus HOM05D000515 ORTHO05D003188 5.8e-20 100.5 63 79.4
C03p12510 Brassica napus HOM05D000515 ORTHO05D003188 5.8e-20 100.5 63 79.4
BolC3t13719H Brassica oleracea HOM05D000515 ORTHO05D003188 5.8e-20 100.5 63 79.4
BraA03t10397Z Brassica rapa HOM05D000515 ORTHO05D003188 5.8e-20 100.5 63 79.4
AT5G22750 Arabidopsis thaliana HOM05D000515 ORTHO05D003188 1.4e-18 95.9 63 76.2
Thhalv10012547m.g Eutrema salsugineum HOM05D000515 ORTHO05D003188 1.4e-18 95.9 62 72.6
AL6G33750 Arabidopsis lyrata HOM05D000515 ORTHO05D003188 3.2e-18 94.7 63 74.6
Aa31LG1G12930 Aethionema arabicum HOM05D000515 ORTHO05D003188 4.1e-18 94.4 62 72.6
THA.LOC104810894 Tarenaya hassleriana HOM05D000515 ORTHO05D003188 4.1e-18 94.4 62 71.0
Carub.0006s2046 Capsella rubella HOM05D000515 ORTHO05D003188 7.1e-18 93.6 62 72.6
COL.COLO4_19278 Corchorus olitorius HOM05D000515 ORTHO05D003188 3.5e-17 91.3 62 67.7
Cfa010097 Carpinus fangiana HOM05D000515 ORTHO05D003188 4.6e-17 90.9 62 69.4
Haze_23463 Corylus avellana HOM05D000515 ORTHO05D003188 4.6e-17 90.9 62 69.4
Sp6g22670 Schrenkiella parvula HOM05D000515 ORTHO05D003188 4.6e-17 90.9 58 74.1
Thecc.09G293000 Theobroma cacao HOM05D000515 ORTHO05D003188 4.6e-17 90.9 62 67.7
Gohir.D13G228100 Gossypium hirsutum HOM05D000515 ORTHO05D003188 6.0e-17 90.5 62 64.5
Gorai.013G258600 Gossypium raimondii HOM05D000515 ORTHO05D003188 6.0e-17 90.5 62 64.5
QL01p013986 Quercus lobata HOM05D000515 ORTHO05D003188 6.0e-17 90.5 62 67.7
CsaV3_1G014470 Cucumis sativus L. HOM05D000515 ORTHO05D003188 7.8e-17 90.1 60 68.3
CARHR190840 Cardamine hirsuta HOM05D000515 ORTHO05D003188 1.7e-16 89.0 62 67.7
MELO3C004806.2 Cucumis melo HOM05D000515 ORTHO05D003188 1.7e-16 89.0 60 66.7
FvH4_6g52660 Fragaria vesca HOM05D000515 ORTHO05D003188 1.7e-16 89.0 62 67.7
FAN02G0544 Fragaria x ananassa HOM05D000515 ORTHO05D003188 1.7e-16 89.0 62 67.7
FAN14G2594 Fragaria x ananassa HOM05D000515 ORTHO05D003188 1.7e-16 89.0 62 67.7
Gohir.A13G223100 Gossypium hirsutum HOM05D000515 ORTHO05D003188 1.7e-16 89.0 62 62.9
GSVIVG01031410001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.7e-16 89.0 62 67.7
Duzib168G1691 Durio zibethinus HOM05D000515 ORTHO05D003188 2.3e-16 88.6 62 64.5
Cpa.g.sc47.56 Carica papaya HOM05D000515 ORTHO05D003188 3.0e-16 88.2 62 67.7
CiPaw.13G141800 Carya illinoinensis HOM05D000515 ORTHO05D003188 3.9e-16 87.8 62 66.1
AUR62031753 Chenopodium quinoa HOM05D000515 ORTHO05D003188 5.1e-16 87.4 62 64.5
ClCG01G012820 Citrullus lanatus HOM05D000515 ORTHO05D003188 5.1e-16 87.4 60 66.7
FAN05G1356 Fragaria x ananassa HOM05D000515 ORTHO05D003188 5.1e-16 87.4 62 66.1
FAN09G2917 Fragaria x ananassa HOM05D000515 ORTHO05D003188 5.1e-16 87.4 62 64.5
Lj1C219T8 Lonicera japonica HOM05D000515 ORTHO05D003188 6.6e-16 87.0 62 61.3
Manes.04G010200 Manihot esculenta HOM05D000515 ORTHO05D003188 6.6e-16 87.0 62 66.1
Cc01_g09920 Coffea canephora HOM05D000515 ORTHO05D003188 1.1e-15 86.3 58 70.7
MD17G1018000 Malus domestica HOM05D000515 ORTHO05D003188 1.1e-15 86.3 62 64.5
AUR62023957 Chenopodium quinoa HOM05D000515 ORTHO05D003188 1.5e-15 85.9 62 62.9
Prupe.3G300100 Prunus persica HOM05D000515 ORTHO05D003188 1.9e-15 85.5 62 62.9
RcHm_v2.0_Chr2g0174191 Rosa chinensis HOM05D000515 ORTHO05D003188 1.9e-15 85.5 62 64.5
Sed0024626 Sechium edule HOM05D000515 ORTHO05D003188 1.9e-15 85.5 60 65.0
MSTRG.12351 Avicennia marina HOM05D000515 ORTHO05D003188 2.5e-15 85.1 62 62.9
Hma1.2p1_0051F.1_g029830 Hydrangea macrophylla HOM05D000515 ORTHO05D003188 2.5e-15 85.1 62 64.5
Actinidia03680 Actinidia chinensis HOM05D000515 ORTHO05D003188 4.3e-15 84.3 60 66.7
Nn6g35080 Nelumbo nucifera HOM05D000515 ORTHO05D003188 4.3e-15 84.3 62 58.1
Ciclev10027736m.g Citrus clementina HOM05D000515 ORTHO05D003188 5.6e-15 84.0 62 62.9
Sc12g0004080 Simmondsia chinensis HOM05D000515 ORTHO05D003188 5.6e-15 84.0 62 64.5
Dinv29414 Davidia involucrata HOM05D000515 ORTHO05D003188 7.3e-15 83.6 62 64.5
TAR633G2687 Trochodendron aralioides HOM05D000515 ORTHO05D003188 7.3e-15 83.6 62 66.1
VMungo1080G0388 Vigna mungo HOM05D000515 ORTHO05D003188 9.5e-15 83.2 63 63.5
Nitab4.5_0002571g0020 Nicotiana tabacum HOM05D000515 ORTHO05D003188 1.2e-14 82.8 61 63.9
Eucgr.J00417 Eucalyptus grandis HOM05D000515 ORTHO05D003188 1.6e-14 82.4 62 59.7
PSO063G7578 Papaver somniferum HOM05D000515 ORTHO05D003188 1.6e-14 82.4 62 62.9
Peaxi162Scf00789g00219 Petunia axillaris HOM05D000515 ORTHO05D003188 1.6e-14 82.4 62 61.3
Phvul.005G128000 Phaseolus vulgaris HOM05D000515 ORTHO05D003188 1.6e-14 82.4 63 61.9
CSS0044014 Camellia sinensis var. sinensis HOM05D000515 ORTHO05D003188 2.1e-14 82.0 62 62.9
Glyma.13G320000 Glycine max HOM05D000515 ORTHO05D003188 2.8e-14 81.6 63 63.5
Nitab4.5_0000442g0260 Nicotiana tabacum HOM05D000515 ORTHO05D003188 2.8e-14 81.6 61 60.7
PGR119G2058 Punica granatum HOM05D000515 ORTHO05D003188 2.8e-14 81.6 63 65.1
SGA_v2.0_scaffold93G28347 Striga asiatica HOM05D000515 ORTHO05D003188 2.8e-14 81.6 62 61.3
vmacro14379 Vaccinium macrocarpon HOM05D000515 ORTHO05D003188 2.8e-14 81.6 63 63.5
ECA233G2159 Erigeron canadensis HOM05D000515 ORTHO05D003188 4.7e-14 80.9 62 62.9
Rhsim01G0209100 Rhododendron simsii HOM05D000515 ORTHO05D003188 4.7e-14 80.9 63 65.1
SHI06139 Sapria himalayana HOM05D000515 ORTHO05D003188 4.7e-14 80.9 62 59.7
TWI79G0233 Tripterygium wilfordii HOM05D000515 ORTHO05D003188 4.7e-14 80.9 62 62.9
Ah.01g016720 Amaranthus hybridus HOM05D000515 ORTHO05D003188 6.2e-14 80.5 62 61.3
PSO339G4405 Papaver somniferum HOM05D000515 ORTHO05D003188 6.2e-14 80.5 62 62.9
arahy.Tifrunner.gnm1.ann1.ZX1X7E Arachis hypogaea HOM05D000515 ORTHO05D003188 8.1e-14 80.1 59 64.4
DCAR_006143 Daucus carota HOM05D000515 ORTHO05D003188 8.1e-14 80.1 62 56.5
Solyc11g066790.2 Solanum lycopersicum HOM05D000515 ORTHO05D003188 8.1e-14 80.1 58 63.8
Sopen11g026510 Solanum pennellii HOM05D000515 ORTHO05D003188 8.1e-14 80.1 58 63.8
Aqoxy1G00964 Aquilegia oxysepala HOM05D000515 ORTHO05D003188 1.1e-13 79.7 62 59.7
arahy.Tifrunner.gnm1.ann1.37RT6C Arachis hypogaea HOM05D000515 ORTHO05D003188 1.1e-13 79.7 58 65.5
Migut.N02522 Erythranthe guttata HOM05D000515 ORTHO05D003188 1.1e-13 79.7 63 61.9
Potri.004G189400 Populus trichocarpa HOM05D000515 ORTHO05D003188 1.8e-13 79.0 62 59.7
CAN.G644.39 Capsicum annuum HOM05D000515 ORTHO05D003188 2.4e-13 78.6 55 65.5
EL10Ac9g21058 Beta vulgaris HOM05D000515 ORTHO05D003188 3.1e-13 78.2 62 56.5
Oeu050172.1 Olea europaea HOM05D000515 ORTHO05D003188 3.1e-13 78.2 60 63.3
Sabra04G0128600 Salix brachista HOM05D000515 ORTHO05D003188 4.0e-13 77.8 62 58.1
Hund00798 Selenicereus undatus HOM05D000515 ORTHO05D003188 6.8e-13 77.0 62 58.1
CANSAT64G0689 Cannabis sativa HOM05D000515 ORTHO05D003188 8.9e-13 76.6 63 65.1
Lalb_Chr14g0374271 Lupinus albus HOM05D000515 ORTHO05D003188 8.9e-13 76.6 62 56.5
HPP92_011558 Vanilla planifolia HOM05D000515 ORTHO05D003188 8.9e-13 76.6 62 58.1
Lsat_1_v5_gn_6_42721 Lactuca sativa HOM05D000515 ORTHO05D003188 1.2e-12 76.3 63 58.7
Medtr2g084630 Medicago truncatula HOM05D000515 ORTHO05D003188 1.5e-12 75.9 62 56.5
Lsat_1_v5_gn_2_33081 Lactuca sativa HOM05D000515 ORTHO05D003188 2.6e-12 75.1 60 58.3
Lsat_1_v5_gn_3_41201 Lactuca sativa HOM05D000038 ORTHO05D000689 2.6e-12 75.1 60 58.3
Lsat_1_v5_gn_5_127720 Lactuca sativa HOM05D000515 ORTHO05D003188 2.6e-12 75.1 60 58.3
Oeu040157.1 Olea europaea HOM05D000515 ORTHO05D003188 2.6e-12 75.1 60 60.0
TPR.G32371 Trifolium pratense HOM05D000515 ORTHO05D003188 2.6e-12 75.1 62 56.5
Psat7g240080 Pisum sativum HOM05D000515 ORTHO05D003188 4.4e-12 74.3 63 55.6
Lj3g0014466 Lotus japonicus HOM05D000515 ORTHO05D003188 5.8e-12 73.9 62 56.5
Lj3g0015065 Lotus japonicus HOM05D000515 ORTHO05D003188 5.8e-12 73.9 62 56.5
HanXRQChr05g0139401 Helianthus annuus HOM05D000515 ORTHO05D021911 1.3e-11 72.8 62 53.2
Ca_01685_v3 Cicer arietinum L. HOM05D000515 ORTHO05D003188 1.7e-11 72.4 62 54.8
Zm00001eb181290 Zea mays HOM05D000515 ORTHO05D003188 1.4e-10 69.3 60 51.7
MBI17_g25941_MAGBIO Magnolia biondii HOM05D000515 ORTHO05D003188 1.9e-10 68.9 57 59.6
ATR0820G006 Amborella trichopoda HOM05D000515 ORTHO05D003188 1.6e-09 65.9 53 60.4
Atru.chr3.3396 Acer truncatum HOM05D000515 ORTHO05D003188 1.9e-07 58.9 45 53.3
A02p24010 Brassica napus HOM05D022549 ORTHO05D099562 7.3e-07 57.0 77 51.9
A05p38260 Brassica napus HOM05D022549 ORTHO05D103524 7.3e-07 57.0 77 51.9
CDE04G3678 Ceratophyllum demersum HOM05D000515 ORTHO05D021911 1.2e-06 56.2 48 47.9
TAR636G3138 Trochodendron aralioides HOM05D000515 ORTHO05D003188 2.1e-06 55.5 58 43.1
Zm00001eb181320 Zea mays HOM05D000515 ORTHO05D003188 3.6e-06 54.7 62 43.5
Migut.G00450 Erythranthe guttata HOM05D000515 ORTHO05D003188 4.7e-06 54.3 59 40.7
Lsat_1_v5_gn_3_122280 Lactuca sativa HOM05D000515 ORTHO05D003188 6.2e-06 53.9 61 37.7
Pp3c5_4990 Physcomitrium patens HOM05D000515 ORTHO05D003188 6.2e-06 53.9 61 34.4
Pp3c5_5006 Physcomitrium patens HOM05D000515 ORTHO05D003188 6.2e-06 53.9 61 34.4
ATR0680G316 Amborella trichopoda HOM05D000515 ORTHO05D003188 8.1e-06 53.5 48 45.8


User provided reference genes

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