Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p11300 Brassica napus HOM05D004115 ORTHO05D005004 2.1e-80 302.4 156 100.0
BcaC07g38375 Brassica carinata HOM05D004115 ORTHO05D005004 1.1e-78 296.6 155 98.7
Thhalv10024316m.g Eutrema salsugineum HOM05D004115 ORTHO05D005004 4.2e-65 251.5 155 83.9
Sp7g27000 Schrenkiella parvula HOM05D004115 ORTHO05D005004 4.2e-65 251.5 157 86.0
BraA08t33936Z Brassica rapa HOM05D004115 ORTHO05D008545 1.3e-63 246.5 155 83.9
A08p19760 Brassica napus HOM05D004115 ORTHO05D008545 5.1e-63 244.6 158 84.2
BolC1t01006H Brassica oleracea HOM05D004115 ORTHO05D005004 1.4e-60 236.5 140 87.9
BraA01t00839Z Brassica rapa HOM05D004115 ORTHO05D005004 1.8e-60 236.1 127 92.9
A01p08930 Brassica napus HOM05D004115 ORTHO05D005004 4.0e-60 235.0 127 92.1
AL7G23380 Arabidopsis lyrata HOM05D004115 ORTHO05D005004 1.2e-59 233.4 157 80.3
BcaC09g51686 Brassica carinata HOM05D004115 ORTHO05D005004 4.5e-59 231.5 155 81.9
BcaNung01334 Brassica carinata HOM05D004115 ORTHO05D005004 2.2e-58 229.2 122 94.3
C01p10470 Brassica napus HOM05D004115 ORTHO05D005004 3.8e-58 228.4 155 81.3
BcaNung00450 Brassica carinata HOM05D004115 ORTHO05D005004 5.4e-57 224.6 157 80.3
AT4G29060 Arabidopsis thaliana HOM05D004115 ORTHO05D005004 2.1e-56 222.6 155 75.5
Carub.0007s1153 Capsella rubella HOM05D004115 ORTHO05D005004 9.6e-54 213.8 157 75.2
CARHR236800 Cardamine hirsuta HOM05D004115 ORTHO05D005004 4.0e-52 208.4 117 90.6
Aa31LG2G21550 Aethionema arabicum HOM05D004115 ORTHO05D005004 7.6e-51 204.1 155 71.0
THA.LOC104804019 Tarenaya hassleriana HOM05D004115 ORTHO05D005004 1.1e-46 190.3 155 67.1
THA.LOC104814561 Tarenaya hassleriana HOM05D004115 ORTHO05D005004 1.5e-46 189.9 155 67.1
Thecc.09G105600 Theobroma cacao HOM05D004115 ORTHO05D005004 2.8e-45 185.7 160 67.5
Cpa.g.sc14.106 Carica papaya HOM05D004115 ORTHO05D005004 7.6e-43 177.6 159 62.9
Gorai.013G230500 Gossypium raimondii HOM05D004115 ORTHO05D005004 7.6e-43 177.6 160 65.0
Gohir.D13G201700 Gossypium hirsutum HOM05D004115 ORTHO05D005004 1.7e-42 176.4 160 65.0
Gohir.A06G064700 Gossypium hirsutum HOM05D004115 ORTHO05D005004 6.5e-42 174.5 159 64.8
Gorai.010G073800 Gossypium raimondii HOM05D004115 ORTHO05D005004 1.4e-41 173.3 159 64.2
COL.COLO4_34806 Corchorus olitorius HOM05D004115 ORTHO05D005004 1.6e-40 169.9 159 62.3
Sabra18G0072200 Salix brachista HOM05D004115 ORTHO05D005004 2.1e-40 169.5 159 59.1
Potri.018G083900 Populus trichocarpa HOM05D004115 ORTHO05D005004 2.7e-40 169.1 159 59.7
Duzib150G0111 Durio zibethinus HOM05D004115 ORTHO05D005004 6.0e-40 167.9 160 62.5
Manes.16G112600 Manihot esculenta HOM05D004115 ORTHO05D005004 7.9e-40 167.5 161 58.4
Cfa003224 Carpinus fangiana HOM05D004115 ORTHO05D005004 1.8e-39 166.4 162 60.5
Haze_25784 Corylus avellana HOM05D004115 ORTHO05D005004 1.8e-39 166.4 162 60.5
Manes.03G024100 Manihot esculenta HOM05D004115 ORTHO05D005004 1.8e-39 166.4 161 60.9
PGR142G2866 Punica granatum HOM05D004115 ORTHO05D005004 3.9e-39 165.2 162 60.5
Atru.chr7.1389 Acer truncatum HOM05D004115 ORTHO05D005004 5.1e-39 164.9 155 58.7
Migut.K00492 Erythranthe guttata HOM05D004115 ORTHO05D005004 2.5e-38 162.5 157 58.0
DCAR_012058 Daucus carota HOM05D004115 ORTHO05D005004 4.3e-38 161.8 157 58.0
Nn3g18135 Nelumbo nucifera HOM05D004115 ORTHO05D005004 5.7e-38 161.4 142 62.7
Ciclev10010581m.g Citrus clementina HOM05D004115 ORTHO05D005004 7.4e-38 161.0 155 55.5
HanXRQChr12g0355051 Helianthus annuus HOM05D004115 ORTHO05D005004 9.7e-38 160.6 154 57.8
Eucgr.C01279 Eucalyptus grandis HOM05D004115 ORTHO05D005004 1.6e-37 159.8 158 61.4
Lsat_1_v5_gn_5_147760 Lactuca sativa HOM05D004115 ORTHO05D005004 4.8e-37 158.3 155 57.4
MSTRG.19573 Avicennia marina HOM05D004115 ORTHO05D005004 8.2e-37 157.5 161 58.4
Hma1.2p1_0945F.1_g240070 Hydrangea macrophylla HOM05D004115 ORTHO05D005004 8.2e-37 157.5 159 59.7
Hma1.2p1_1151F.1_g261850 Hydrangea macrophylla HOM05D004115 ORTHO05D005004 8.2e-37 157.5 159 59.7
QL02p044736 Quercus lobata HOM05D004115 ORTHO05D005004 1.4e-36 156.8 160 56.2
Oeu060218.1 Olea europaea HOM05D004115 ORTHO05D005004 1.8e-36 156.4 157 56.7
CSS0007554 Camellia sinensis var. sinensis HOM05D004115 ORTHO05D005004 2.4e-36 156.0 167 55.1
Peaxi162Scf00231g00054 Petunia axillaris HOM05D004115 ORTHO05D005004 3.1e-36 155.6 161 56.5
TAR383G0462 Trochodendron aralioides HOM05D004115 ORTHO05D005004 3.1e-36 155.6 160 55.6
ECA234G3475 Erigeron canadensis HOM05D004115 ORTHO05D005004 4.1e-36 155.2 154 57.8
TWI34G1278 Tripterygium wilfordii HOM05D004115 ORTHO05D005004 5.3e-36 154.8 158 56.3
CiPaw.04G161500 Carya illinoinensis HOM05D004115 ORTHO05D005004 6.9e-36 154.5 160 57.5
AUR62010941 Chenopodium quinoa HOM05D004115 ORTHO05D005004 6.9e-36 154.5 161 54.0
AUR62021454 Chenopodium quinoa HOM05D004115 ORTHO05D005004 6.9e-36 154.5 146 57.5
HanXRQChr10g0318741 Helianthus annuus HOM05D004115 ORTHO05D005004 6.9e-36 154.5 154 57.8
unitig_37.g12650 Utricularia gibba HOM05D004115 ORTHO05D005004 6.9e-36 154.5 161 58.4
TWI63G0403 Tripterygium wilfordii HOM05D004115 ORTHO05D005004 1.2e-35 153.7 158 55.7
Cc06_g10060 Coffea canephora HOM05D004115 ORTHO05D005004 1.5e-35 153.3 157 58.0
Lalb_Chr14g0371681 Lupinus albus HOM05D004115 ORTHO05D005004 1.5e-35 153.3 158 56.3
ClCG06G008850 Citrullus lanatus HOM05D004115 ORTHO05D005004 2.0e-35 152.9 158 56.3
Lalb_Chr24g0397481 Lupinus albus HOM05D004115 ORTHO05D005004 2.0e-35 152.9 158 56.3
Prupe.7G225300 Prunus persica HOM05D004115 ORTHO05D005004 2.0e-35 152.9 160 56.2
MELO3C024701.2 Cucumis melo HOM05D004115 ORTHO05D005004 3.4e-35 152.1 158 55.7
Lj2g0008578 Lotus japonicus HOM05D004115 ORTHO05D005004 3.4e-35 152.1 158 55.1
Sed0004305 Sechium edule HOM05D004115 ORTHO05D005004 5.9e-35 151.4 155 52.9
Ah.14g082400 Amaranthus hybridus HOM05D004115 ORTHO05D005004 7.7e-35 151.0 160 55.0
Peaxi162Scf00665g00018 Petunia axillaris HOM05D004115 ORTHO05D005004 7.7e-35 151.0 160 53.8
Nitab4.5_0002431g0020 Nicotiana tabacum HOM05D004115 ORTHO05D005004 1.0e-34 150.6 160 55.6
Sc18g0001370 Simmondsia chinensis HOM05D004115 ORTHO05D005004 1.0e-34 150.6 134 60.4
Nitab4.5_0000823g0030 Nicotiana tabacum HOM05D004115 ORTHO05D005004 1.7e-34 149.8 160 55.0
CAN.G258.4 Capsicum annuum HOM05D004115 ORTHO05D005004 2.2e-34 149.4 160 54.4
CsaV3_1G021840 Cucumis sativus L. HOM05D004115 ORTHO05D005004 2.2e-34 149.4 158 55.1
Sed0026728 Sechium edule HOM05D004115 ORTHO05D005004 2.9e-34 149.1 156 53.2
SalBow6G6960 Salvia bowleyana HOM05D004115 ORTHO05D005004 3.8e-34 148.7 125 64.0
FAN28G0287 Fragaria x ananassa HOM05D004115 ORTHO05D005004 6.5e-34 147.9 159 54.7
MD02G1057500 Malus domestica HOM05D004115 ORTHO05D005004 6.5e-34 147.9 160 52.5
FAN19G0797 Fragaria x ananassa HOM05D004115 ORTHO05D005004 8.5e-34 147.5 159 54.1
FAN23G0635 Fragaria x ananassa HOM05D004115 ORTHO05D005004 8.5e-34 147.5 159 54.1
FAN26G0981 Fragaria x ananassa HOM05D004115 ORTHO05D005004 8.5e-34 147.5 159 54.1
FAN26G2080 Fragaria x ananassa HOM05D004115 ORTHO05D005004 8.5e-34 147.5 159 54.1
Glyma.01G145400 Glycine max HOM05D004115 ORTHO05D005004 8.5e-34 147.5 158 55.1
Glyma.09G193300 Glycine max HOM05D004115 ORTHO05D005004 2.5e-33 146.0 157 55.4
MD15G1191900 Malus domestica HOM05D004115 ORTHO05D005004 2.5e-33 146.0 160 51.9
RcHm_v2.0_Chr2g0091281 Rosa chinensis HOM05D004115 ORTHO05D005004 2.5e-33 146.0 118 62.7
Actinidia09435 Actinidia chinensis HOM05D004115 ORTHO05D005004 3.2e-33 145.6 159 52.2
FvH4_1g05650 Fragaria vesca HOM05D004115 ORTHO05D005004 4.2e-33 145.2 159 53.5
PGSC0003DMG400003138 Solanum tuberosum HOM05D004115 ORTHO05D005004 4.2e-33 145.2 160 53.1
VMungo0464G0214 Vigna mungo HOM05D004115 ORTHO05D005004 4.2e-33 145.2 158 54.4
PSO210G1769 Papaver somniferum HOM05D004115 ORTHO05D005004 9.4e-33 144.1 155 52.9
PSO210G7660 Papaver somniferum HOM05D004115 ORTHO05D005004 9.4e-33 144.1 155 52.9
MBI01_g38799_MAGBIO Magnolia biondii HOM05D004115 ORTHO05D005004 1.2e-32 143.7 164 51.8
Phvul.004G168100 Phaseolus vulgaris HOM05D004115 ORTHO05D005004 1.6e-32 143.3 159 54.1
arahy.Tifrunner.gnm1.ann1.SK3XBC Arachis hypogaea HOM05D004115 ORTHO05D005004 6.1e-32 141.4 139 57.6
Solyc07g018360.3 Solanum lycopersicum HOM05D004115 ORTHO05D005004 6.1e-32 141.4 160 51.9
Sopen07g007510 Solanum pennellii HOM05D004115 ORTHO05D005004 6.1e-32 141.4 160 51.9
EL10Ac8g18429 Beta vulgaris HOM05D004115 ORTHO05D005004 7.9e-32 141.0 150 52.7
CDE02G3981 Ceratophyllum demersum HOM05D004115 ORTHO05D005004 2.3e-31 139.4 163 50.9
CDE08G1325 Ceratophyllum demersum HOM05D004115 ORTHO05D005004 2.3e-31 139.4 162 50.6
arahy.Tifrunner.gnm1.ann1.T3DUTL Arachis hypogaea HOM05D004115 ORTHO05D005004 5.1e-31 138.3 159 54.1
SGA_v2.0_scaffold30G12384 Striga asiatica HOM05D004115 ORTHO05D005004 1.1e-30 137.1 156 51.3
Hund09224 Selenicereus undatus HOM05D004115 ORTHO05D005004 5.7e-30 134.8 158 51.3
Ca_25549_v3 Cicer arietinum L. HOM05D004115 ORTHO05D005004 1.7e-29 133.3 161 50.9
Glyma.08G036300 Glycine max HOM05D004115 ORTHO05D005004 1.7e-29 133.3 131 53.4
ATR0315G017 Amborella trichopoda HOM05D004115 ORTHO05D005004 2.2e-29 132.9 163 50.9
CANSAT56G3189 Cannabis sativa HOM05D004115 ORTHO05D005004 3.7e-29 132.1 158 49.4
Aqoxy7G03864 Aquilegia oxysepala HOM05D004115 ORTHO05D005004 1.1e-28 130.6 156 51.9
Medtr6g088270 Medicago truncatula HOM05D004115 ORTHO05D005004 1.1e-28 130.6 156 53.2
Actinidia20401 Actinidia chinensis HOM05D004115 ORTHO05D005004 2.4e-28 129.4 163 49.7
Lj7A657T48 Lonicera japonica HOM05D004115 ORTHO05D005004 6.9e-28 127.9 156 49.4
Hund26231 Selenicereus undatus HOM05D004115 ORTHO05D009493 1.5e-27 126.7 160 50.0
TPR.G34916 Trifolium pratense HOM05D004115 ORTHO05D005004 2.6e-27 125.9 157 49.0
Psat1g044600 Pisum sativum HOM05D004115 ORTHO05D005004 2.2e-26 122.9 157 47.1
vmacro10876 Vaccinium macrocarpon HOM05D004115 ORTHO05D005004 1.4e-25 120.2 156 48.1
Aqoxy7G01526 Aquilegia oxysepala HOM05D004115 ORTHO05D005004 1.7e-21 106.7 118 49.2
Os12g0541500 Oryza sativa ssp. japonica HOM05D004115 ORTHO05D005004 4.8e-21 105.1 150 42.7
Gohir.D06G063300 Gossypium hirsutum HOM05D004115 ORTHO05D005004 1.2e-19 100.5 72 73.6
Zm00001eb110810 Zea mays HOM05D004115 ORTHO05D005004 4.5e-19 98.6 168 37.5
GSVIVG01015347001 Vitis vinifera HOM05D004115 ORTHO05D005004 2.7e-16 89.4 105 50.5
SMO364G0950 Selaginella moellendorffii HOM05D004115 ORTHO05D005004 4.7e-16 88.6 117 47.0
SMO197G0023 Selaginella moellendorffii HOM05D004115 ORTHO05D005004 9.7e-14 80.9 116 43.1
SEGI_05158 Sequoiadendron giganteum HOM05D004115 ORTHO05D005004 3.7e-13 79.0 124 37.9
BcaNung02886 Brassica carinata HOM05D004115 ORTHO05D005004 4.5e-11 72.0 42 85.7
Mapoly0191s0001 Marchantia polymorpha HOM05D004115 ORTHO05D005004 5.9e-11 71.6 163 36.2
Migut.J01138 Erythranthe guttata HOM05D004115 ORTHO05D005004 7.7e-11 71.2 121 38.0
Pp3c3_11830 Physcomitrium patens HOM05D004115 ORTHO05D005004 2.9e-10 69.3 138 39.1
Pp3c3_11840 Physcomitrium patens HOM05D004115 ORTHO05D005004 2.9e-10 69.3 138 39.1
AagrBONN_evm.TU.Sc2ySwM_117.2162 Anthoceros agrestis HOM05D004115 ORTHO05D005004 5.0e-10 68.6 106 39.6
Pp3c13_21470 Physcomitrium patens HOM05D004115 ORTHO05D005004 8.5e-10 67.8 155 37.4
BcaNung02884 Brassica carinata HOM05D004115 ORTHO05D005004 1.5e-09 67.0 42 76.2
Zm00001eb091130 Zea mays HOM05D004115 ORTHO05D005004 1.5e-09 67.0 80 41.2
Rhsim05G0043600 Rhododendron simsii HOM05D004115 ORTHO05D005004 4.2e-09 65.5 95 40.0
VMungo1080G1171 Vigna mungo HOM05D004115 ORTHO05D005004 2.7e-08 62.8 83 50.6
BcaNung02885 Brassica carinata HOM05D004115 ORTHO05D005004 3.6e-08 62.4 35 85.7
AagrBONN_evm.TU.Sc2ySwM_228.5663 Anthoceros agrestis HOM05D004115 ORTHO05D005004 6.1e-08 61.6 154 37.0
VMungo1215G1941 Vigna mungo HOM05D004115 ORTHO05D005004 1.5e-06 57.0 37 70.3
Medtr6g087270 Medicago truncatula HOM05D004115 ORTHO05D005004 2.0e-06 56.6 61 54.1


User provided reference genes

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