Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-104 383.3 186 100.0
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 8.1e-100 367.1 186 95.2
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 5.0e-65 251.5 184 72.8
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 4.6e-63 245.0 186 71.0
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 5.3e-59 231.5 116 95.7
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 8.5e-49 197.6 112 85.7
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-48 197.2 112 85.7
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-48 197.2 112 85.7
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 1.1e-48 197.2 112 85.7
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 7.2e-48 194.5 112 83.9
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 7.2e-48 194.5 112 83.9
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 5.7e-45 184.9 94 93.6
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 2.2e-44 183.0 147 68.7
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 5.0e-41 171.8 112 73.2
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 8.0e-39 164.5 112 67.9
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 2.3e-38 162.9 113 70.8
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 3.0e-38 162.5 112 67.9
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 4.0e-38 162.2 112 67.9
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 6.7e-38 161.4 122 69.7
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 6.7e-38 161.4 114 68.4
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.2e-34 150.6 119 63.9
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 1.0e-33 147.5 106 70.8
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 2.2e-33 146.4 122 61.5
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 5.0e-33 145.2 124 58.9
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 6.5e-33 144.8 113 63.7
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 1.1e-32 144.1 119 62.2
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 1.5e-32 143.7 119 61.3
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.5e-32 143.7 98 67.3
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 4.2e-32 142.1 117 61.5
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 5.5e-32 141.7 122 58.2
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 9.4e-32 141.0 123 59.3
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 9.4e-32 141.0 110 60.9
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 1.2e-31 140.6 122 58.2
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 2.1e-31 139.8 104 63.5
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 2.7e-31 139.4 117 59.0
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 6.1e-31 138.3 119 56.3
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 1.0e-30 137.5 120 60.0
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.0e-30 137.5 113 61.1
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 1.4e-30 137.1 99 67.7
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 1.8e-30 136.7 122 57.4
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.8e-30 136.7 110 61.8
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.8e-30 136.7 110 61.8
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 1.8e-30 136.7 113 61.1
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 4.0e-30 135.6 122 56.6
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 4.0e-30 135.6 112 58.9
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 5.2e-30 135.2 110 60.9
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 6.8e-30 134.8 122 59.0
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 6.8e-30 134.8 122 59.0
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 6.8e-30 134.8 114 59.6
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 6.8e-30 134.8 114 59.6
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 6.8e-30 134.8 115 60.0
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 8.8e-30 134.4 126 55.6
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 1.2e-29 134.0 97 66.0
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 1.2e-29 134.0 97 66.0
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 1.2e-29 134.0 97 66.0
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 1.2e-29 134.0 98 64.3
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.5e-29 133.7 122 57.4
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 1.5e-29 133.7 122 57.4
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 2.6e-29 132.9 117 59.0
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 3.4e-29 132.5 117 59.8
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 3.4e-29 132.5 123 56.1
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 4.4e-29 132.1 122 56.6
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 4.4e-29 132.1 113 58.4
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 4.4e-29 132.1 118 55.9
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 4.4e-29 132.1 122 58.2
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 4.4e-29 132.1 122 56.6
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 5.7e-29 131.7 122 57.4
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 5.7e-29 131.7 122 54.9
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 5.7e-29 131.7 118 56.8
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 7.5e-29 131.3 117 59.0
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 9.8e-29 131.0 117 58.1
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 9.8e-29 131.0 115 57.4
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 1.7e-28 130.2 120 57.5
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 2.2e-28 129.8 124 54.8
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 2.2e-28 129.8 117 58.1
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 2.8e-28 129.4 115 60.0
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 2.8e-28 129.4 115 60.0
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 2.8e-28 129.4 122 53.3
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 2.8e-28 129.4 122 54.1
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 3.7e-28 129.0 104 58.7
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 3.7e-28 129.0 115 57.4
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 3.7e-28 129.0 99 63.6
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 4.8e-28 128.6 118 54.2
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 4.8e-28 128.6 118 56.8
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 6.3e-28 128.3 122 55.7
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 6.3e-28 128.3 104 56.7
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 8.3e-28 127.9 119 54.6
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 8.3e-28 127.9 108 58.3
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 8.3e-28 127.9 104 57.7
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 8.3e-28 127.9 100 63.0
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 1.1e-27 127.5 104 56.7
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 1.1e-27 127.5 122 54.9
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 1.1e-27 127.5 112 55.4
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.1e-27 127.5 104 59.6
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.4e-27 126.3 112 56.2
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 2.4e-27 126.3 115 56.5
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.4e-27 126.3 118 52.5
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.4e-27 126.3 118 52.5
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 3.1e-27 125.9 122 54.1
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 3.1e-27 125.9 100 60.0
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 5.4e-27 125.2 116 56.0
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 5.4e-27 125.2 104 60.6
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 7.0e-27 124.8 124 54.8
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 7.0e-27 124.8 104 55.8
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 9.1e-27 124.4 119 55.5
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 9.1e-27 124.4 119 55.5
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.6e-26 123.6 119 55.5
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.6e-26 123.6 120 53.3
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 2.0e-26 123.2 80 70.0
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 2.0e-26 123.2 80 70.0
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 2.0e-26 123.2 104 58.7
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.7e-26 122.9 115 54.8
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 2.7e-26 122.9 99 59.6
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 2.7e-26 122.9 104 56.7
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 3.5e-26 122.5 120 52.5
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 4.5e-26 122.1 104 53.8
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 5.9e-26 121.7 89 65.2
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 5.9e-26 121.7 119 51.3
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 2.3e-25 119.8 111 54.1
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 2.9e-25 119.4 80 70.0
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 2.9e-25 119.4 113 53.1
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 3.8e-25 119.0 112 52.7
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 3.8e-25 119.0 111 54.1
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 3.8e-25 119.0 97 57.7
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 3.8e-25 119.0 99 58.6
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 5.0e-25 118.6 111 53.2
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 6.6e-25 118.2 112 51.8
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 8.6e-25 117.9 80 68.8
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 8.6e-25 117.9 120 50.0
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 2.5e-24 116.3 112 52.7
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 2.5e-24 116.3 110 53.6
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 3.3e-24 115.9 115 53.0
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 4.2e-24 115.5 123 50.4
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 4.2e-24 115.5 112 50.9
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 7.2e-24 114.8 107 55.1
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.2e-23 114.0 112 50.9
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 1.6e-23 113.6 76 68.4
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 1.6e-23 113.6 87 67.8
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 1.6e-23 113.6 76 68.4
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.6e-23 113.6 112 50.9
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.8e-23 112.8 118 50.8
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.8e-23 112.8 118 50.8
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 3.6e-23 112.5 110 50.9
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 3.6e-23 112.5 98 58.2
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 6.1e-23 111.7 120 53.3
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 8.0e-23 111.3 81 63.0
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 1.0e-22 110.9 106 50.9
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 1.4e-22 110.5 93 60.2
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.8e-22 110.2 124 49.2
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 1.8e-22 110.2 98 56.1
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 1.8e-22 110.2 104 53.8
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 3.0e-22 109.4 116 48.3
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 4.0e-22 109.0 108 51.9
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 2.6e-21 106.3 97 50.5
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 7.5e-21 104.8 102 53.9
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 4.9e-20 102.1 84 58.3
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 6.3e-20 101.7 97 51.5
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 5.4e-19 98.6 97 46.4
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 2.7e-18 96.3 85 55.3
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 5.9e-18 95.1 118 44.9
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.0e-17 94.4 106 49.1
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 1.3e-17 94.0 110 47.3
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 8.6e-17 91.3 87 51.7
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 8.6e-17 91.3 68 61.8
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 2.5e-16 89.7 83 48.2
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 1.0e-14 84.3 53 73.6
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 1.8e-14 83.6 101 45.5
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 6.0e-10 68.6 74 47.3
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 3.3e-08 62.8 87 40.2
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 3.6e-07 59.3 117 33.3
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 8.9e-06 54.7 70 41.4


User provided reference genes

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