Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1725.3 946 100.0
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1718.4 946 99.7
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1644.4 946 95.1
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1595.5 946 93.0
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 0.0e+00 1488.0 955 85.0
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1416.4 965 81.8
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1413.3 963 81.2
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 0.0e+00 1408.7 863 86.1
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1396.7 878 83.8
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1396.7 878 83.8
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1378.2 913 81.5
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 0.0e+00 1370.1 832 86.2
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 0.0e+00 1364.7 839 85.2
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 0.0e+00 1331.6 899 80.5
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1325.1 969 78.4
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 0.0e+00 1265.8 868 77.8
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 1.9e-309 1065.8 848 68.4
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 4.2e-277 958.4 825 63.9
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 2.5e-274 949.1 911 60.8
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 1.3e-273 946.8 847 61.4
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 2.8e-273 945.7 809 64.2
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 7.1e-269 931.0 815 62.9
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 1.8e-267 926.4 863 59.9
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 6.7e-267 924.5 976 55.5
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 2.5e-266 922.5 815 62.5
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 7.4e-266 921.0 849 60.4
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 7.4e-266 921.0 803 62.5
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 4.8e-265 918.3 878 59.6
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 2.4e-264 916.0 807 62.2
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 6.9e-264 914.4 891 59.4
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 3.4e-263 912.1 820 61.2
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 2.5e-261 906.0 808 61.3
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 9.4e-261 904.0 868 58.6
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 2.1e-260 902.9 871 58.6
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 7.9e-260 901.0 866 59.2
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 1.8e-259 899.8 808 61.0
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 6.7e-259 897.9 818 60.0
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 8.8e-259 897.5 810 61.0
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 8.8e-259 897.5 905 58.0
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 3.3e-258 895.6 923 56.6
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 1.7e-257 893.3 914 55.7
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 3.7e-257 892.1 819 60.1
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 3.7e-257 892.1 828 60.0
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 6.3e-257 891.3 879 57.5
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 1.1e-256 890.6 817 60.5
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 6.9e-256 887.9 843 58.6
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 6.9e-256 887.9 962 55.1
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 2.0e-255 886.3 810 60.5
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 2.0e-255 886.3 819 59.8
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 2.0e-255 886.3 882 56.8
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 3.4e-255 885.6 879 57.5
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 3.4e-255 885.6 877 57.7
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.8e-254 882.1 857 57.5
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 3.8e-254 882.1 864 57.5
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 6.5e-254 881.3 828 58.7
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.1e-253 880.6 888 57.1
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 1.9e-253 879.8 833 58.3
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 2.5e-253 879.4 810 60.2
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 1.2e-252 877.1 863 57.1
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 2.3e-251 872.8 880 56.9
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 2.3e-251 872.8 879 56.2
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 6.7e-251 871.3 808 59.5
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 3.3e-250 869.0 880 57.0
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 5.7e-250 868.2 913 56.4
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 5.3e-248 861.7 880 55.6
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 1.2e-247 860.5 883 55.7
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 1.5e-247 860.1 880 55.6
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 3.5e-247 859.0 814 58.7
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 7.7e-247 857.8 574 82.2
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 3.2e-245 852.4 925 53.6
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 5.2e-243 845.1 795 59.0
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 2.6e-242 842.8 812 58.3
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 2.8e-241 839.3 753 61.9
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 6.3e-241 838.2 828 56.6
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.8e-240 836.6 941 52.0
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 3.1e-240 835.9 873 53.7
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 3.1e-240 835.9 873 55.2
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 4.1e-240 835.5 830 57.5
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 9.1e-240 834.3 875 54.4
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 6.5e-238 828.2 884 53.6
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 1.9e-237 826.6 897 56.2
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 5.5e-237 825.1 829 56.7
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 7.2e-237 824.7 806 56.5
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 1.7e-233 813.5 745 59.6
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 1.7e-233 813.5 872 54.1
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 5.4e-232 808.5 848 55.1
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 6.1e-228 795.0 745 58.3
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.0e-223 780.0 807 54.2
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 2.7e-223 779.6 974 49.3
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 8.0e-220 768.1 738 57.9
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 7.5e-218 761.5 811 52.9
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 3.6e-212 742.7 858 51.5
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 1.7e-209 733.8 855 50.9
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 2.9e-209 733.0 730 56.7
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 8.3e-209 731.5 922 48.7
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 3.6e-204 716.1 905 48.7
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 3.4e-202 709.5 885 51.3
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 3.2e-200 703.0 810 51.6
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 2.8e-180 636.7 805 47.3
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 4.5e-162 576.2 890 43.0
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.3e-156 558.1 898 42.4
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 3.7e-148 530.0 510 56.3
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 4.2e-136 490.0 853 40.9
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 7.4e-133 479.2 673 47.4
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 6.3e-132 476.1 860 39.0
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 6.5e-129 466.1 361 79.2
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 5.5e-120 436.4 436 55.0
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 9.8e-101 372.5 355 54.9
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 3.7e-84 317.4 1055 30.2
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.0e-81 307.8 220 73.2
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 5.8e-77 293.5 455 42.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 4.9e-60 237.3 741 31.6
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 6.2e-47 193.7 343 37.0
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 5.1e-41 174.1 107 77.6
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.6e-39 169.1 159 56.0
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 1.1e-38 166.4 106 75.5
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 1.2e-34 152.9 237 42.2
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 1.6e-26 125.9 91 73.6
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 6.9e-22 110.5 778 24.2
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.0e-20 104.4 150 40.7
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.9e-19 102.4 73 69.9
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.2e-10 73.2 46 76.1
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.3e-07 63.2 265 32.8
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 4.8e-07 61.2 92 33.7
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 2.4e-06 58.9 87 35.6
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 9.1e-06 57.0 67 37.3


User provided reference genes

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