Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 0.0e+00 1159.4 595 100.0
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 0.0e+00 1099.3 641 89.4
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 3.2e-283 978.0 603 85.7
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 2.3e-209 732.6 740 57.4
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 3.4e-192 675.6 745 54.2
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 2.9e-183 646.0 847 48.9
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 8.7e-180 634.4 743 52.5
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 1.0e-175 620.9 735 51.8
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 3.8e-175 619.0 742 51.5
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.1e-153 547.7 861 44.3
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 1.8e-153 547.0 850 43.8
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 9.1e-153 544.7 716 48.9
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 9.7e-147 524.6 849 43.9
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 2.0e-144 516.9 886 42.0
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 7.7e-144 515.0 882 41.6
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 6.1e-133 478.8 758 42.3
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 4.4e-107 392.9 671 39.6
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 3.2e-105 386.7 676 39.1
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.1e-105 386.3 699 37.9
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 3.6e-101 373.2 712 36.8
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 6.2e-101 372.5 710 36.8
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 3.1e-100 370.2 675 37.9
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 1.2e-99 368.2 696 36.6
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 2.0e-99 367.5 674 36.6
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 2.0e-99 367.5 695 37.0
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 2.2e-98 364.0 615 38.4
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 2.2e-98 364.0 681 37.4
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 4.9e-98 362.8 664 36.3
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.9e-97 360.9 715 36.2
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 4.6e-96 356.3 706 36.5
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 4.6e-96 356.3 678 37.0
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 7.8e-96 355.5 715 35.8
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 7.8e-96 355.5 727 34.7
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.0e-95 355.1 712 35.7
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 8.6e-95 352.1 611 37.6
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-94 351.3 678 35.7
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 2.5e-94 350.5 726 33.3
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 2.5e-94 350.5 683 36.2
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 4.3e-94 349.7 673 34.0
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 7.3e-94 349.0 725 33.4
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 2.1e-93 347.4 666 36.6
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 2.8e-93 347.1 650 37.1
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 3.6e-93 346.7 615 38.5
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 8.1e-93 345.5 744 33.6
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.4e-92 344.7 636 37.4
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 4.0e-92 343.2 715 34.3
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 6.8e-92 342.4 654 36.9
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 8.9e-92 342.0 723 33.7
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 2.6e-91 340.5 729 34.8
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 2.6e-91 340.5 718 35.1
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 4.4e-91 339.7 730 35.1
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 4.4e-91 339.7 728 35.0
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 7.6e-91 339.0 679 35.1
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 2.2e-90 337.4 631 37.9
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 2.2e-90 337.4 677 35.9
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 2.9e-90 337.0 621 37.7
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 2.9e-90 337.0 705 34.5
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 1.1e-89 335.1 669 36.6
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 3.2e-89 333.6 670 35.7
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 3.2e-89 333.6 722 33.7
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 4.6e-88 329.7 739 34.4
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 7.8e-88 328.9 729 33.7
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 1.7e-87 327.8 724 33.8
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 2.5e-86 323.9 772 32.4
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.3e-86 323.2 713 34.2
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 5.6e-86 322.8 721 33.3
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 9.6e-86 322.0 713 34.1
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.8e-85 320.5 762 33.9
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 2.8e-85 320.5 717 34.7
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 2.8e-85 320.5 669 35.1
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 8.1e-85 318.9 645 35.3
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 1.1e-84 318.5 690 33.6
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 5.2e-84 316.2 718 34.0
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 6.8e-84 315.8 769 33.3
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.9e-84 315.5 711 34.2
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.6e-83 313.9 669 34.2
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 7.6e-83 312.4 713 33.5
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 2.2e-82 310.8 569 38.0
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 2.9e-82 310.5 743 32.4
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 3.8e-82 310.1 692 34.4
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 1.1e-81 308.5 671 33.8
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 4.2e-81 306.6 736 33.4
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 7.1e-81 305.8 727 32.7
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.6e-80 304.7 687 33.5
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 3.5e-80 303.5 717 33.5
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 7.8e-80 302.4 799 31.3
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 3.0e-79 300.4 677 33.5
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 4.3e-78 296.6 701 33.1
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 7.3e-78 295.8 693 32.2
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.3e-77 295.0 655 34.2
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 2.1e-77 294.3 698 33.8
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 4.0e-76 290.0 662 34.0
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 5.8e-75 286.2 720 32.5
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 6.4e-74 282.7 466 39.5
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.2e-73 280.0 693 33.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 6.0e-72 276.2 617 34.7
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 6.2e-69 266.2 178 77.5
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 6.2e-69 266.2 178 77.5
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.4e-68 265.0 689 32.8
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.4e-67 260.4 540 35.4
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 4.6e-64 250.0 649 30.5
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.1e-62 245.4 658 30.1
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 5.3e-60 236.5 767 29.5
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 9.0e-60 235.7 598 34.1
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 4.5e-59 233.4 597 32.0
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.8e-55 221.5 719 28.0
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.1e-52 210.3 678 27.0
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 5.3e-52 209.9 359 37.0
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.2e-49 200.7 580 30.7
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.2e-40 172.2 267 36.7
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 3.0e-39 167.5 491 30.1
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.8e-37 161.0 315 34.9
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 3.1e-36 157.5 607 26.7
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 9.1e-36 156.0 193 40.9
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 5.0e-34 150.2 594 26.4
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 7.9e-32 142.9 235 35.7
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 3.9e-31 140.6 728 22.8
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.6e-27 127.9 583 26.4
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 4.2e-25 120.6 386 24.9
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.3e-21 109.0 593 26.5
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 8.2e-21 106.3 86 58.1
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 8.0e-16 89.7 82 50.0
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 9.8e-14 82.8 80 47.5
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.3e-13 82.4 66 54.5
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 2.5e-09 68.2 212 29.7
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.2e-06 59.3 79 34.2
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 5.7e-06 57.0 85 38.8


User provided reference genes

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