Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 0.0e+00 1553.9 808 100.0
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 0.0e+00 1490.3 781 99.7
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 0.0e+00 1410.2 777 95.5
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 0.0e+00 1399.0 732 99.7
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 0.0e+00 1376.7 749 97.1
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 0.0e+00 1251.9 733 89.9
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 0.0e+00 1179.5 732 83.6
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 0.0e+00 1171.4 734 83.2
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 0.0e+00 1159.1 735 82.7
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 0.0e+00 1153.7 736 82.1
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 0.0e+00 1153.3 734 82.7
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 0.0e+00 1113.6 738 80.2
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 0.0e+00 1087.0 744 77.4
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 2.7e-269 932.2 743 68.1
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 7.6e-219 764.6 658 60.5
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 5.3e-212 741.9 740 54.5
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 5.8e-211 738.4 716 55.7
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 1.7e-210 736.9 652 59.4
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 3.8e-210 735.7 746 54.3
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.4e-209 733.8 710 56.1
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 3.3e-206 722.6 700 55.9
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 1.6e-205 720.3 747 53.3
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 4.8e-205 718.8 739 53.3
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 1.8e-204 716.8 708 54.4
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 4.0e-204 715.7 739 53.0
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 9.9e-203 711.1 769 52.5
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 6.4e-202 708.4 755 52.2
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 9.3e-201 704.5 720 52.8
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 6.0e-200 701.8 703 52.3
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 5.6e-198 695.3 693 53.4
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 9.6e-198 694.5 654 56.1
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 3.7e-197 692.6 654 55.0
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 4.0e-196 689.1 733 49.8
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 4.9e-194 682.2 721 51.9
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 5.5e-193 678.7 697 52.4
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 9.3e-193 677.9 749 51.1
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 2.1e-192 676.8 705 51.9
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 4.6e-192 675.6 665 54.7
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 1.3e-191 674.1 728 50.4
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 3.0e-191 672.9 708 51.0
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 3.9e-191 672.5 703 52.3
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 6.7e-191 671.8 719 50.2
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 8.7e-191 671.4 669 54.7
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 7.4e-190 668.3 697 52.1
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 1.3e-189 667.5 727 51.6
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 6.3e-189 665.2 704 51.1
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.4e-188 664.1 725 50.3
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 1.4e-188 664.1 740 49.2
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.8e-188 663.7 697 51.4
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 6.9e-188 661.8 734 48.5
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 9.0e-188 661.4 726 50.7
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 1.2e-187 661.0 828 46.6
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 1.7e-186 657.1 704 51.4
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 1.4e-185 654.1 711 49.4
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.9e-185 653.7 743 49.5
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 1.6e-184 650.6 606 55.6
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 1.3e-183 647.5 730 49.0
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 1.8e-183 647.1 650 53.4
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 5.1e-183 645.6 757 50.6
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 5.1e-183 645.6 699 49.6
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 3.3e-182 642.9 702 51.0
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 3.3e-182 642.9 718 49.9
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 4.3e-182 642.5 747 48.2
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 5.7e-182 642.1 692 50.4
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 9.7e-182 641.3 649 52.1
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 1.6e-181 640.6 715 51.3
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 1.1e-180 637.9 651 51.5
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 2.4e-180 636.7 694 50.7
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.1e-180 636.3 666 50.9
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.4e-179 632.9 663 50.7
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 1.0e-178 631.3 724 48.1
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 1.3e-178 630.9 714 49.0
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 1.3e-178 630.9 669 50.7
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 2.9e-178 629.8 718 50.0
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 1.2e-176 624.4 715 50.2
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 6.1e-176 622.1 717 49.0
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 1.4e-175 620.9 701 50.6
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 3.9e-175 619.4 702 50.7
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 1.1e-174 617.8 714 48.6
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 3.3e-174 616.3 734 49.6
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 9.7e-174 614.8 703 49.8
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 3.1e-172 609.8 658 51.4
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 4.1e-172 609.4 674 49.6
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 1.7e-170 604.0 693 48.2
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 2.2e-170 603.6 724 47.7
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 5.0e-170 602.4 646 49.2
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 2.3e-167 593.6 584 52.9
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 1.1e-166 591.3 701 46.9
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 2.0e-166 590.5 721 46.5
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 3.5e-163 579.7 1071 37.1
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 8.5e-162 575.1 677 48.7
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.6e-158 563.5 569 52.2
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 3.2e-153 546.6 708 44.5
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 1.8e-151 540.8 617 48.0
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 2.8e-141 506.9 715 42.7
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.7e-141 506.5 747 42.3
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.3e-138 498.0 703 44.0
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 8.9e-135 485.3 473 52.9
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 8.3e-117 425.6 665 41.7
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 4.0e-103 380.2 694 37.0
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 9.6e-97 359.0 371 53.1
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 1.5e-94 351.7 672 35.1
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 9.9e-94 349.0 300 60.7
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 3.8e-93 347.1 382 49.0
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 4.2e-92 343.6 620 36.8
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 3.1e-87 327.4 728 32.6
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.1e-76 292.4 259 59.1
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 1.3e-74 285.4 574 33.3
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 1.6e-67 261.9 606 33.2
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 8.2e-64 249.6 395 41.3
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 9.4e-60 236.1 688 29.8
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 1.9e-52 211.8 593 28.5
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 5.2e-50 203.8 271 45.4
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 5.9e-46 190.3 632 26.9
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 1.6e-38 165.6 729 24.3
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 2.9e-29 134.8 658 25.2
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 3.0e-26 124.8 173 45.1
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 3.0e-26 124.8 206 41.3
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 9.8e-25 119.8 455 25.5
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 1.0e-21 109.8 92 65.2
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.3e-21 109.4 74 77.0
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.6e-19 102.4 160 39.4
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 4.9e-16 90.9 146 41.1
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.4e-15 89.4 124 46.0
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 3.9e-13 81.3 681 21.3
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 7.3e-12 77.0 120 39.2
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.2e-08 65.5 73 39.7
AT1G22240 Arabidopsis thaliana HOM05D000867 ORTHO05D000864 2.7e-06 58.5 282 23.0
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 7.8e-06 57.0 127 32.3


User provided reference genes

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